AJUBA ajuba LIM protein [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: AJUBAprovided by VGNC
Official Full Name: ajuba LIM proteinprovided by VGNC
Primary source: VGNC:VGNC:25769
See related: BGD:BT30432; Ensembl:ENSBTAG00000012724
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as: JUB
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2023_09	current	ARS-UCD2.0 (GCF_002263795.3)	10	NC_037337.1 (21862575..21872027)

Chromosome 10 - NC_037337.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

MARC_11631-11632:1002817108:1 (e-PCR)
- UniSTS:267252

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables transcription corepressor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cytoskeleton organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of hippo signaling	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of miRNA-mediated gene silencing	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed
involved_in response to hypoxia	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in P-body	IEA Inferred from Electronic Annotation more info	PubMed
located_in adherens junction	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed
part_of transcription regulator complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: LIM domain-containing protein ajuba

Names: jub, ajuba homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001192517.1 → NP_001179446.1 LIM domain-containing protein ajuba

See identical proteins and their annotated locations for NP_001179446.1

Status: PROVISIONAL

Source sequence(s)

NKLS02000010

UniProtKB/Swiss-Prot

E1BKA3

UniProtKB/TrEMBL

A0A3Q1MNN9

Related

ENSBTAP00000016915.5, ENSBTAT00000016915.7

Conserved Domains (3) summary

cd09352
Location:348 → 401

LIM1_Ajuba_like; The first LIM domain of Ajuba-like proteins

cd09355
Location:413 → 465

LIM2_Ajuba_like; The second LIM domain of Ajuba-like proteins

cd09438
Location:473 → 534

LIM3_Ajuba_like; The third LIM domain of Ajuba-like proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

Range

21862575..21872027

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_024997545.2 → XP_024853313.1 LIM domain-containing protein ajuba isoform X1

Conserved Domains (1) summary

cl02475
Location:46 → 107

LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers