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ZNF771 zinc finger protein 771 [ Homo sapiens (human) ]

Gene ID: 51333, updated on 1-Jun-2020

Summary

Official Symbol
ZNF771provided by HGNC
Official Full Name
zinc finger protein 771provided by HGNC
Primary source
HGNC:HGNC:29653
See related
Ensembl:ENSG00000179965
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DSC43
Expression
Broad expression in brain (RPKM 2.2), kidney (RPKM 2.2) and 20 other tissues See more
Orthologs

Genomic context

See ZNF771 in Genome Data Viewer
Location:
16p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (30407414..30419414)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (30418735..30429916)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene myosin light chain, phosphorylatable, fast skeletal muscle Neighboring gene Sharpr-MPRA regulatory region 9884 Neighboring gene septin 1 Neighboring gene zinc finger protein 48 Neighboring gene small nucleolar RNA, H/ACA box 80C Neighboring gene dCTP pyrophosphatase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cellular response to DNA damage stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 771
Names
mesenchymal stem cell protein DSC43

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142305.2NP_001135777.1  zinc finger protein 771

    See identical proteins and their annotated locations for NP_001135777.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
    Source sequence(s)
    AC116348, AK313930, BC011870
    Consensus CDS
    CCDS45460.1
    UniProtKB/Swiss-Prot
    Q7L3S4
    UniProtKB/TrEMBL
    B2R9V3
    Related
    ENSP00000323945.5, ENST00000319296.10
    Conserved Domains (3) summary
    COG5048
    Location:62221
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:6585
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:245269
    zf-H2C2_2; Zinc-finger double domain
  2. NM_016643.3NP_057727.2  zinc finger protein 771

    See identical proteins and their annotated locations for NP_057727.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
    Source sequence(s)
    AK313930, BC011870, BI599970
    Consensus CDS
    CCDS45460.1
    UniProtKB/Swiss-Prot
    Q7L3S4
    UniProtKB/TrEMBL
    B2R9V3
    Related
    ENSP00000416197.1, ENST00000434417.1
    Conserved Domains (3) summary
    COG5048
    Location:62221
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:6585
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:245269
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    30407414..30419414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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