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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008961.2 RefSeqGene
- Range
-
5035..126648
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001315529.2 → NP_001302458.1 pericentrin isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence and uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) is shorter at the N-terminus and lacks an alternate internal segment compared to isoform 1.
- Source sequence(s)
-
AB007862, AF515282, AP000471, AP001477, AW452809
- Consensus CDS
-
CCDS93109.1
- UniProtKB/Swiss-Prot
-
O95613
- Related
- ENSP00000511989.1, ENST00000480896.5
- Conserved Domains (3) summary
-
- TIGR02168
Location:1162 → 1839
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam07798
Location:145 → 276
- DUF1640; Protein of unknown function (DUF1640)
- pfam10495
Location:2942 → 3019
- PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
-
NM_006031.6 → NP_006022.3 pericentrin isoform 1
See identical proteins and their annotated locations for NP_006022.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AB007862, AF515282, AW452809, BP311784, BP312870, DC345793
- Consensus CDS
-
CCDS33592.1
- UniProtKB/Swiss-Prot
- O95613, Q7Z7C9
- Related
- ENSP00000352572.5, ENST00000359568.10
- Conserved Domains (3) summary
-
- TIGR02168
Location:1280 → 1957
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam07798
Location:263 → 394
- DUF1640; Protein of unknown function (DUF1640)
- pfam10495
Location:3139 → 3216
- PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000021.9 Reference GRCh38.p14 Primary Assembly
- Range
-
46324156..46445769
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011529594.4 → XP_011527896.1 pericentrin isoform X1
- Conserved Domains (3) summary
-
- TIGR02168
Location:1307 → 1984
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam07798
Location:290 → 421
- DUF1640; Protein of unknown function (DUF1640)
- pfam10495
Location:3166 → 3243
- PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
-
XM_047440809.1 → XP_047296765.1 pericentrin isoform X14
-
XM_047440807.1 → XP_047296763.1 pericentrin isoform X12
-
XM_047440816.1 → XP_047296772.1 pericentrin isoform X22
-
XM_047440800.1 → XP_047296756.1 pericentrin isoform X5
-
XM_047440813.1 → XP_047296769.1 pericentrin isoform X19
-
XM_047440798.1 → XP_047296754.1 pericentrin isoform X2
-
XM_047440808.1 → XP_047296764.1 pericentrin isoform X13
-
XM_047440801.1 → XP_047296757.1 pericentrin isoform X6
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XM_047440802.1 → XP_047296758.1 pericentrin isoform X7
-
XM_047440814.1 → XP_047296770.1 pericentrin isoform X20
-
XM_047440803.1 → XP_047296759.1 pericentrin isoform X8
-
XM_005261124.6 → XP_005261181.1 pericentrin isoform X3
- UniProtKB/TrEMBL
-
A0A8Q3SHZ3
- Related
- ENSP00000512015.1, ENST00000695558.1
- Conserved Domains (4) summary
-
- COG1196
Location:870 → 1615
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- TIGR02168
Location:246 → 1035
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam07798
Location:263 → 394
- DUF1640; Protein of unknown function (DUF1640)
- pfam10495
Location:3150 → 3227
- PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
-
XM_047440811.1 → XP_047296767.1 pericentrin isoform X17
-
XM_017028362.3 → XP_016883851.1 pericentrin isoform X15
-
XM_047440804.1 → XP_047296760.1 pericentrin isoform X9
-
XM_047440818.1 → XP_047296774.1 pericentrin isoform X24
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XM_047440799.1 → XP_047296755.1 pericentrin isoform X4
-
XM_047440812.1 → XP_047296768.1 pericentrin isoform X18
-
XM_047440810.1 → XP_047296766.1 pericentrin isoform X16
-
XM_047440817.1 → XP_047296773.1 pericentrin isoform X23
-
XM_047440815.1 → XP_047296771.1 pericentrin isoform X21
-
XM_047440805.1 → XP_047296761.1 pericentrin isoform X10
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XM_047440806.1 → XP_047296762.1 pericentrin isoform X11
-
XM_024452082.2 → XP_024307850.1 pericentrin isoform X25
- Conserved Domains (3) summary
-
- pfam10495
Location:2778 → 2855
- PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
- cl25732
Location:498 → 1243
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26511
Location:2173 → 2585
- Neuromodulin_N; Gap junction protein N-terminal region
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XM_047440819.1 → XP_047296775.1 pericentrin isoform X26
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XM_047440820.1 → XP_047296776.1 pericentrin isoform X26
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XM_047440821.1 → XP_047296777.1 pericentrin isoform X27
Alternate T2T-CHM13v2.0
Genomic
-
NC_060945.1 Alternate T2T-CHM13v2.0
- Range
-
44709501..44831895
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)