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ANKIB1 ankyrin repeat and IBR domain containing 1 [ Bos taurus (domestic cattle) ]

Gene ID: 505204, updated on 17-Aug-2024

Summary

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Official Symbol
ANKIB1provided by VGNC
Official Full Name
ankyrin repeat and IBR domain containing 1provided by VGNC
Primary source
VGNC:VGNC:25902
See related
BGD:BT12648; Ensembl:ENSBTAG00000034936
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (9567912..9725826)

Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene leucine rich repeats and death domain containing 1 Neighboring gene uncharacterized LOC112446355 Neighboring gene KRIT1 ankyrin repeat containing Neighboring gene small ribosomal subunit protein uS8-like Neighboring gene microRNA mir-584-5 Neighboring gene transmembrane BAX inhibitor motif containing 7 Neighboring gene GATA zinc finger domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and IBR domain-containing protein 1
NP_001178981.1
XP_024846297.1
XP_024846298.1
XP_024846300.1
XP_059741423.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192052.2 → NP_001178981.1  ankyrin repeat and IBR domain-containing protein 1

    See identical proteins and their annotated locations for NP_001178981.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000004
    UniProtKB/TrEMBL
    A0AAA9SME8, F1MDC0
    Related
    ENSBTAP00000086500.1, ENSBTAT00000128743.1
    Conserved Domains (4) summary
    cd00204
    Location:47 → 195
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:47 → 77
    ANK; ANK repeat [structural motif]
    pfam01485
    Location:403 → 476
    IBR; IBR domain, a half RING-finger domain
    cd16774
    Location:333 → 389
    RING-HC_RBR_ANKIB1; RING finger, HC subclass, found in ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    9567912..9725826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024990530.2 → XP_024846298.1  ankyrin repeat and IBR domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAA9SME8, F1MDC0
    Related
    ENSBTAP00000083925.1, ENSBTAT00000107522.1
    Conserved Domains (4) summary
    cd00204
    Location:47 → 195
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:47 → 77
    ANK; ANK repeat [structural motif]
    pfam01485
    Location:403 → 476
    IBR; IBR domain, a half RING-finger domain
    cd16774
    Location:333 → 389
    RING-HC_RBR_ANKIB1; RING finger, HC subclass, found in ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins

  2. XM_024990529.2 → XP_024846297.1  ankyrin repeat and IBR domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    F1MDC0
    Conserved Domains (4) summary
    cd00204
    Location:47 → 195
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:47 → 77
    ANK; ANK repeat [structural motif]
    pfam01485
    Location:403 → 476
    IBR; IBR domain, a half RING-finger domain
    cd16774
    Location:333 → 389
    RING-HC_RBR_ANKIB1; RING finger, HC subclass, found in ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins

  3. XM_024990532.2 → XP_024846300.1  ankyrin repeat and IBR domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    F1MDC0
    Conserved Domains (2) summary
    pfam01485
    Location:202 → 275
    IBR; IBR domain, a half RING-finger domain
    cd16774
    Location:132 → 188
    RING-HC_RBR_ANKIB1; RING finger, HC subclass, found in ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins

  4. XM_059885440.1 → XP_059741423.1  ankyrin repeat and IBR domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    F1MDC0
Nucleotide Protein Strain
Heading Accession and Version

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