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Arl6ip6 ADP ribosylation factor like GTPase 6 interacting protein 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499798, updated on 17-Aug-2024

Summary

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Official Symbol
Arl6ip6provided by RGD
Official Full Name
ADP ribosylation factor like GTPase 6 interacting protein 6provided by RGD
Primary source
RGD:1564819
See related
EnsemblRapid:ENSRNOG00000005074 AllianceGenome:RGD:1564819
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in nuclear inner membrane. Orthologous to human ARL6IP6 (ADP ribosylation factor like GTPase 6 interacting protein 6). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 109.5), Adrenal (RPKM 105.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Arl6ip6 in Genome Data Viewer
Location:
3q12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (58098978..58126962)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (37689994..37720358)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (38742072..38768010)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene formin-like 2 Neighboring gene uncharacterized LOC134486095 Neighboring gene uncharacterized LOC134486096 Neighboring gene pre-mRNA processing factor 40 homolog A Neighboring gene NADH:ubiquinone oxidoreductase subunit B1, pseudogene 2 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells. Cheng LC, et al. Nucleus, 2019 Dec. PMID 31142202, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nuclear inner membrane ISO
Inferred from Sequence Orthology
more info
  
located_in nuclear inner membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ADP-ribosylation factor-like protein 6-interacting protein 6
Names
ADP-ribosylation factor GTPase 6 interacting protein 6
ADP-ribosylation factor-like 6 interacting protein 6
ADP-ribosylation-like factor 6-interacting protein 6
ARL-6-interacting protein 6
aip-6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024310.1 → NP_001019481.1  ADP-ribosylation factor-like protein 6-interacting protein 6

    See identical proteins and their annotated locations for NP_001019481.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079329
    UniProtKB/Swiss-Prot
    Q68FV2
    UniProtKB/TrEMBL
    A6JF34
    Related
    ENSRNOP00000108042.1, ENSRNOT00000147151.1
    Conserved Domains (1) summary
    pfam15062
    Location:135 → 211
    ARL6IP6; Haemopoietic lineage transmembrane helix

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    58098978..58126962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039105669.2 → XP_038961597.1  ADP-ribosylation factor-like protein 6-interacting protein 6 isoform X1

    Related
    ENSRNOP00000006774.5, ENSRNOT00000006774.8
    Conserved Domains (1) summary
    pfam15062
    Location:135 → 204
    ARL6IP6; Haemopoietic lineage transmembrane helix

RNA

  1. XR_010064684.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q68FV2.1 GenPept UniProtKB/Swiss-Prot:Q68FV2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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