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UBN1 ubinuclein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 490022, updated on 5-Mar-2024

Summary

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Official Symbol
UBN1provided by VGNC
Official Full Name
ubinuclein 1provided by VGNC
Primary source
VGNC:VGNC:48081
See related
Ensembl:ENSCAFG00845017631
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (36745422..36784724, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (37934552..37974038, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (36834628..36873909, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (36540042..36579317, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (36432947..36472235, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene SEC14 like lipid binding 5 Neighboring gene periplakin Neighboring gene uncharacterized LOC111096307 Neighboring gene glyoxylate reductase 1 homolog Neighboring gene rogdi atypical leucine zipper Neighboring gene small integral membrane protein 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the ubinuclein protein as a new member of the nuclear and adhesion complex components (NACos). Aho S, et al. Biol Cell, 2009 Jun. PMID 18823282

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubinuclein-1; LOW QUALITY PROTEIN: ubinuclein-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    36745422..36784724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038669265.1 → XP_038525193.1  ubinuclein-1 isoform X5

    UniProtKB/TrEMBL
    A0A8I3S2V7
    Conserved Domains (3) summary
    PHA03247
    Location:745 → 1113
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 530
    UBN_AB; Ubinuclein conserved middle domain

  2. XM_038669264.1 → XP_038525192.1  ubinuclein-1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LKR7, A0A8C0ME42, A0A8I3S2T3
    Related
    ENSCAFP00845024562.1, ENSCAFT00845031371.1
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  3. XM_038669262.1 → XP_038525190.1  ubinuclein-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  4. XM_038669261.1 → XP_038525189.1  ubinuclein-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  5. XM_038669260.1 → XP_038525188.1  ubinuclein-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 1156
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    36540042..36579317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479243.1 → XP_038335171.1  LOW QUALITY PROTEIN: ubinuclein-1 isoform X3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    36432947..36472235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604578.1 → XP_038460506.1  ubinuclein-1 isoform X5

    Conserved Domains (3) summary
    PHA03247
    Location:745 → 1113
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 530
    UBN_AB; Ubinuclein conserved middle domain

  2. XM_038604577.1 → XP_038460505.1  ubinuclein-1 isoform X4

    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  3. XM_038604576.1 → XP_038460504.1  ubinuclein-1 isoform X3

    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  4. XM_038604575.1 → XP_038460503.1  ubinuclein-1 isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  5. XM_038604574.1 → XP_038460502.1  ubinuclein-1 isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:788 → 1156
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    36834628..36873909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540481.1 → XP_038396409.1  ubinuclein-1 isoform X5

    UniProtKB/TrEMBL
    A0A8I3S2V7
    Conserved Domains (3) summary
    PHA03247
    Location:745 → 1113
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 530
    UBN_AB; Ubinuclein conserved middle domain

  2. XM_038540480.1 → XP_038396408.1  ubinuclein-1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LKR7, A0A8C0ME42, A0A8I3S2T3
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  3. XM_038540478.1 → XP_038396406.1  ubinuclein-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  4. XM_038540477.1 → XP_038396405.1  ubinuclein-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  5. XM_038540476.1 → XP_038396404.1  ubinuclein-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 1156
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    37934552..37974038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022420095.2 → XP_022275803.1  ubinuclein-1 isoform X5

    UniProtKB/TrEMBL
    A0A8I3S2V7
    Conserved Domains (3) summary
    PHA03247
    Location:745 → 1113
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 530
    UBN_AB; Ubinuclein conserved middle domain

  2. XM_547142.7 → XP_547142.2  ubinuclein-1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LKR7, A0A8C0ME42, A0A8I3S2T3
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  3. XM_005621586.4 → XP_005621643.1  ubinuclein-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  4. XM_022420094.2 → XP_022275802.1  ubinuclein-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 973
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain

  5. XM_022420093.2 → XP_022275801.1  ubinuclein-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LKR7
    Conserved Domains (3) summary
    PHA03247
    Location:788 → 1156
    PHA03247; large tegument protein UL36; Provisional
    pfam08729
    Location:117 → 168
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:353 → 573
    UBN_AB; Ubinuclein conserved middle domain
Nucleotide Protein
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