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C6H16orf89 chromosome 6 C16orf89 homolog [ Canis lupus familiaris (dog) ]

Gene ID: 490018, updated on 17-Aug-2024

Summary

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Official Symbol
C6H16orf89provided by VGNC
Official Full Name
chromosome 6 C16orf89 homologprovided by VGNC
Primary source
VGNC:VGNC:52573
See related
Ensembl:ENSCAFG00845016484
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (36590239..36604802)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (37778562..37794456)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (36680313..36694835)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (36388880..36403412)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (36280052..36294599)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase family member 7-like Neighboring gene eukaryotic elongation factor 2 lysine methyltransferase Neighboring gene ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase Neighboring gene N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase Neighboring gene SEC14 like lipid binding 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UPF0764 protein C16orf89 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    36590239..36604802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038669252.1 → XP_038525180.1  UPF0764 protein C16orf89 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0MCB8
    Conserved Domains (1) summary
    pfam15882
    Location:61 → 340
    DUF4735; Domain of unknown function (DUF4735)

  2. XM_038669251.1 → XP_038525179.1  UPF0764 protein C16orf89 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0MCB8, A0A8I3P069
    Related
    ENSCAFP00845022997.1, ENSCAFT00845029240.1
    Conserved Domains (1) summary
    pfam15882
    Location:61 → 341
    DUF4735; Domain of unknown function (DUF4735)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    36388880..36403412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479237.1 → XP_038335165.1  UPF0764 protein C16orf89 homolog isoform X2

  2. XM_038479236.1 → XP_038335164.1  UPF0764 protein C16orf89 homolog isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    36280052..36294599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604566.1 → XP_038460494.1  UPF0764 protein C16orf89 homolog isoform X2

  2. XM_038604565.1 → XP_038460493.1  UPF0764 protein C16orf89 homolog isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    36680313..36694835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540467.1 → XP_038396395.1  UPF0764 protein C16orf89 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0MCB8

  2. XM_038540466.1 → XP_038396394.1  UPF0764 protein C16orf89 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0MCB8

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    37778562..37794456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038535240.1 → XP_038391168.1  UPF0764 protein C16orf89 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8P0SMY0
    Conserved Domains (1) summary
    pfam15882
    Location:83 → 363
    DUF4735; Domain of unknown function (DUF4735)
Nucleotide Protein
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