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SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like [ Canis lupus familiaris (dog) ]

Gene ID: 486397, updated on 5-Mar-2024

Summary

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Gene symbol
SPECC1L
Gene description
sperm antigen with calponin homology and coiled-coil domains 1 like
See related
Ensembl:ENSCAFG00845022108
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
CYTSA
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (29398465..29531216)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (27101372..27201064)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (28119986..28219566)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (27513613..27612876)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (27130906..27230482)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene RAB36, member RAS oncogene family Neighboring gene uncharacterized LOC111092680 Neighboring gene BCR activator of RhoGEF and GTPase Neighboring gene adenosine A2a receptor Neighboring gene beta-ureidopropionase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytospin-A
Names
SPECC1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048114.1 → NP_001041579.1  cytospin-A

    See identical proteins and their annotated locations for NP_001041579.1

    Status: PROVISIONAL

    Source sequence(s)
    AY884295
    UniProtKB/Swiss-Prot
    Q2KNA0
    UniProtKB/TrEMBL
    A0A8I3PE80, A0A8P0SIH6
    Conserved Domains (4) summary
    PHA03247
    Location:827 → 992
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:500 → 801
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:202 → 825
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd21199
    Location:1005 → 1116
    CH_CYTS; calponin homology (CH) domain found in the cytospin family

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    29398465..29531216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038436095.1 → XP_038292023.1  cytospin-A isoform X1

    UniProtKB/Swiss-Prot
    Q2KNA0
    UniProtKB/TrEMBL
    A0A8I3PE80, A0A8P0SIH6
    Related
    ENSCAFP00845030582.1, ENSCAFT00845039043.1
    Conserved Domains (4) summary
    PHA03247
    Location:827 → 992
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:500 → 801
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:202 → 825
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd21199
    Location:1005 → 1116
    CH_CYTS; calponin homology (CH) domain found in the cytospin family

  2. XM_038436091.1 → XP_038292019.1  cytospin-A isoform X1

    UniProtKB/Swiss-Prot
    Q2KNA0
    UniProtKB/TrEMBL
    A0A8I3PE80, A0A8P0SIH6
    Conserved Domains (4) summary
    PHA03247
    Location:827 → 992
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:500 → 801
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:202 → 825
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd21199
    Location:1005 → 1116
    CH_CYTS; calponin homology (CH) domain found in the cytospin family

  3. XM_038436094.1 → XP_038292022.1  cytospin-A isoform X1

    UniProtKB/Swiss-Prot
    Q2KNA0
    UniProtKB/TrEMBL
    A0A8I3PE80, A0A8P0SIH6
    Conserved Domains (4) summary
    PHA03247
    Location:827 → 992
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:500 → 801
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:202 → 825
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd21199
    Location:1005 → 1116
    CH_CYTS; calponin homology (CH) domain found in the cytospin family

  4. XM_038436093.1 → XP_038292021.1  cytospin-A isoform X1

    UniProtKB/Swiss-Prot
    Q2KNA0
    UniProtKB/TrEMBL
    A0A8I3PE80, A0A8P0SIH6
    Conserved Domains (4) summary
    PHA03247
    Location:827 → 992
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:500 → 801
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:202 → 825
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd21199
    Location:1005 → 1116
    CH_CYTS; calponin homology (CH) domain found in the cytospin family

  5. XM_038436092.1 → XP_038292020.1  cytospin-A isoform X1

    UniProtKB/Swiss-Prot
    Q2KNA0
    UniProtKB/TrEMBL
    A0A8I3PE80, A0A8P0SIH6
    Conserved Domains (4) summary
    PHA03247
    Location:827 → 992
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:500 → 801
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:202 → 825
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd21199
    Location:1005 → 1116
    CH_CYTS; calponin homology (CH) domain found in the cytospin family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    27513613..27612876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    27130906..27230482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    28119986..28219566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    27101372..27201064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2KNA0.1 GenPept UniProtKB/Swiss-Prot:Q2KNA0

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