The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference ROS_Cfam_1.0

Genomic

1. NC_051817.1 Reference ROS_Cfam_1.0

   Range

   34116591..34377405 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_038685102.1 → XP_038541030.1  collagen alpha-1(XXII) chain isoform X3

   Conserved Domains (3) summary

   pfam01391
   Location:1235 → 1291

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

2. XM_038685101.1 → XP_038541029.1  collagen alpha-1(XXII) chain isoform X2

   UniProtKB/TrEMBL

   A0A8I3NGA1

   Related

   ENSCAFP00845016329.1, ENSCAFT00845020806.1

   Conserved Domains (4) summary

   PRK07764
   Location:780 → 971

   PRK07764; DNA polymerase III subunits gamma and tau; Validated

   pfam01391
   Location:1256 → 1312

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

3. XM_038685100.1 → XP_038541028.1  collagen alpha-1(XXII) chain isoform X1

   UniProtKB/TrEMBL

   A0A8I3NJ29

   Conserved Domains (3) summary

   pfam01391
   Location:1274 → 1330

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

4. XM_038685099.1 → XP_038541027.1  collagen alpha-1(XXII) chain isoform X1

   UniProtKB/TrEMBL

   A0A8I3NJ29

   Related

   ENSCAFP00845016131.1, ENSCAFT00845020565.1

   Conserved Domains (3) summary

   pfam01391
   Location:1274 → 1330

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

5. XM_038685103.1 → XP_038541031.1  collagen alpha-1(XXII) chain isoform X4

   Conserved Domains (3) summary

   pfam01391
   Location:1274 → 1330

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

6. XM_038685104.1 → XP_038541032.1  collagen alpha-1(XXII) chain isoform X5

   Conserved Domains (2) summary

   pfam01391
   Location:990 → 1046

   Collagen; Collagen triple helix repeat (20 copies)

   cl22861
   Location:6 → 150

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

Alternate UMICH_Zoey_3.1

Genomic

1. NC_049273.1 Alternate UMICH_Zoey_3.1

   Range

   33840117..34099779 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_038493344.1 → XP_038349272.1  LOW QUALITY PROTEIN: collagen alpha-1(XXII) chain isoform X6

Alternate UNSW_CanFamBas_1.0

Genomic

1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

   Range

   33929879..34189293 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_038619018.1 → XP_038474946.1  collagen alpha-1(XXII) chain isoform X7

Alternate UU_Cfam_GSD_1.0

Genomic

1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

   Range

   34334014..34603326 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_038555601.1 → XP_038411529.1  LOW QUALITY PROTEIN: collagen alpha-1(XXII) chain isoform X8

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

   Range

   33718626..33979031 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_022426742.2 → XP_022282450.1  collagen alpha-1(XXII) chain isoform X4

   Conserved Domains (3) summary

   pfam01391
   Location:1271 → 1330

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

2. XM_022426741.2 → XP_022282449.1  collagen alpha-1(XXII) chain isoform X3

   Conserved Domains (3) summary

   pfam01391
   Location:1232 → 1291

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

3. XM_539177.7 → XP_539177.3  collagen alpha-1(XXII) chain isoform X1

   See identical proteins and their annotated locations for XP_539177.3

   UniProtKB/TrEMBL

   A0A8P0S732

   Conserved Domains (3) summary

   pfam01391
   Location:1271 → 1330

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

4. XM_022426740.2 → XP_022282448.1  collagen alpha-1(XXII) chain isoform X2

   UniProtKB/TrEMBL

   A0A8P0PHQ7

   Conserved Domains (4) summary

   pfam01391
   Location:1253 → 1312

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

   cl26386
   Location:780 → 971

   DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

5. XM_005627990.4 → XP_005628047.1  collagen alpha-1(XXII) chain isoform X1

   See identical proteins and their annotated locations for XP_005628047.1

   UniProtKB/TrEMBL

   A0A8P0S732

   Conserved Domains (3) summary

   pfam01391
   Location:1271 → 1330

   Collagen; Collagen triple helix repeat (20 copies)

   cl00057
   Location:44 → 227

   vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

   cl22861
   Location:247 → 434

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

6. XM_022426743.2 → XP_022282451.1  collagen alpha-1(XXII) chain isoform X5

   Conserved Domains (2) summary

   pfam01391
   Location:987 → 1046

   Collagen; Collagen triple helix repeat (20 copies)

   cl22861
   Location:6 → 150

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...