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FOCAD focadhesin [ Canis lupus familiaris (dog) ]

Gene ID: 481557, updated on 17-Aug-2024

Summary

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Official Symbol
FOCADprovided by VGNC
Official Full Name
focadhesinprovided by VGNC
Primary source
VGNC:VGNC:40938
See related
Ensembl:ENSCAFG00845015191
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
44
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (41207527..41519558)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (38928212..39240145)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (40322038..40635712)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (39898503..40211709)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (39681955..40000022)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111098065 Neighboring gene MLLT3 super elongation complex subunit Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene microRNA mir-491 Neighboring gene small nucleolar RNA SNORA30/SNORA37 family Neighboring gene uncharacterized LOC119873919 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC111097941 Neighboring gene 3-hydroxyacyl-CoA dehydratase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • KIAA1797

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
focadhesin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    41207527..41519558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038681854.1 → XP_038537782.1  focadhesin isoform X1

    UniProtKB/TrEMBL
    A0A8C0TBP3
    Related
    ENSCAFP00845021545.1, ENSCAFT00845027371.1
    Conserved Domains (2) summary
    pfam11229
    Location:1218 → 1806
    Focadhesin
    pfam12530
    Location:490 → 714
    DUF3730; Protein of unknown function (DUF3730)

  2. XM_038681855.1 → XP_038537783.1  focadhesin isoform X2

    UniProtKB/TrEMBL
    A0A8C0TBP3
    Related
    ENSCAFP00845021594.1, ENSCAFT00845027445.1
    Conserved Domains (2) summary
    pfam11229
    Location:1217 → 1805
    Focadhesin
    pfam12530
    Location:490 → 714
    DUF3730; Protein of unknown function (DUF3730)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    39898503..40211709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490403.1 → XP_038346331.1  focadhesin isoform X1

  2. XM_038490404.1 → XP_038346332.1  focadhesin isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    39681955..40000022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616372.1 → XP_038472300.1  focadhesin isoform X1

  2. XM_038616373.1 → XP_038472301.1  focadhesin isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    40322038..40635712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552511.1 → XP_038408439.1  focadhesin isoform X1

    UniProtKB/TrEMBL
    A0A8C0T9M2, A0A8C0TBP3

  2. XM_038552512.1 → XP_038408440.1  focadhesin isoform X2

    UniProtKB/TrEMBL
    A0A8C0KLM1, A0A8C0TBP3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38928212..39240145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005626671.4 → XP_005626728.1  focadhesin isoform X1

    See identical proteins and their annotated locations for XP_005626728.1

    UniProtKB/TrEMBL
    A0A8C0TBP3
    Conserved Domains (2) summary
    pfam11229
    Location:1218 → 1806
    DUF3028; Protein of unknown function (DUF3028)
    pfam12530
    Location:490 → 714
    DUF3730; Protein of unknown function (DUF3730)

  2. XM_538678.7 → XP_538678.2  focadhesin isoform X2

    UniProtKB/TrEMBL
    A0A8C0TBP3
    Conserved Domains (2) summary
    pfam11229
    Location:1217 → 1805
    DUF3028; Protein of unknown function (DUF3028)
    pfam12530
    Location:490 → 714
    DUF3730; Protein of unknown function (DUF3730)
Nucleotide Protein
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