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Focad focadhesin [ Mus musculus (house mouse) ]

Gene ID: 230393, updated on 12-Aug-2019

Summary

Official Symbol
Focadprovided by MGI
Official Full Name
focadhesinprovided by MGI
Primary source
MGI:MGI:2676921
See related
Ensembl:ENSMUSG00000038368
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in frontal lobe adult (RPKM 3.5), cortex adult (RPKM 3.3) and 28 other tissues See more
Orthologs

Genomic context

See Focad in Genome Data Viewer
Location:
4; 4 C4
Exon count:
47
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (88094620..88411011)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (87740534..88056915)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34180 Neighboring gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 Neighboring gene predicted gene, 34232 Neighboring gene microRNA 491 Neighboring gene 3-hydroxyacyl-CoA dehydratase 4 Neighboring gene interferon beta 1, fibroblast Neighboring gene interferon alpha 15

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Homology

Clone Names

  • KIAA1797

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
focal adhesion ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081184.1NP_001074653.1  focadhesin

    See identical proteins and their annotated locations for NP_001074653.1

    Status: PROVISIONAL

    Source sequence(s)
    AL772296, AL772316, AL831756, BX572638
    Consensus CDS
    CCDS38798.1
    UniProtKB/Swiss-Prot
    A2AKG8
    Related
    ENSMUSP00000095602.3, ENSMUST00000097992.9
    Conserved Domains (2) summary
    pfam11229
    Location:12101798
    DUF3028; Protein of unknown function (DUF3028)
    pfam12530
    Location:490714
    DUF3730; Protein of unknown function (DUF3730)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p6 C57BL/6J

    Range
    88094620..88411011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253421.1XP_030109281.1  focadhesin isoform X2

  2. XM_006537886.3XP_006537949.1  focadhesin isoform X5

    Conserved Domains (1) summary
    pfam12530
    Location:528752
    DUF3730; Protein of unknown function (DUF3730)
  3. XM_006537885.4XP_006537948.1  focadhesin isoform X4

    Conserved Domains (1) summary
    pfam12530
    Location:528752
    DUF3730; Protein of unknown function (DUF3730)
  4. XM_011250013.2XP_011248315.1  focadhesin isoform X1

    UniProtKB/TrEMBL
    E9PYJ6
    Related
    ENSMUSP00000124298.1, ENSMUST00000159342.7
    Conserved Domains (2) summary
    pfam11229
    Location:11241712
    DUF3028; Protein of unknown function (DUF3028)
    pfam12530
    Location:404628
    DUF3730; Protein of unknown function (DUF3730)
  5. XM_006537884.4XP_006537947.1  focadhesin isoform X3

    Conserved Domains (2) summary
    pfam11229
    Location:11131701
    DUF3028; Protein of unknown function (DUF3028)
    pfam12530
    Location:393617
    DUF3730; Protein of unknown function (DUF3730)
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