UBE4A ubiquitination factor E4A [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: UBE4Aprovided by VGNC
Official Full Name: ubiquitination factor E4Aprovided by VGNC
Primary source: VGNC:VGNC:48072
See related: Ensembl:ENSCAFG00845002347
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	5	NC_051809.1 (15280409..15318046, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	5	NC_006587.4 (15389033..15426486, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	5	NC_049226.1 (15363227..15400919, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	5	NC_049265.1 (15418864..15456318, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	5	NC_049746.1 (15322601..15359769, complement)

Chromosome 5 - NC_051809.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

RH18212 (e-PCR)
- UniSTS:92411

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ubiquitin-ubiquitin ligase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein polyubiquitination	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed
part_of ubiquitin ligase complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: ubiquitin conjugation factor E4 A

Names: ubiquitination factor E4A (UFD2 homolog, yeast)

XP_038330797.1

EC 2.3.2.27

XP_038391924.1

EC 2.3.2.27

XP_038456127.1

EC 2.3.2.27

XP_038520664.1

EC 2.3.2.27

XP_850081.1

EC 2.3.2.27

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051809.1 Reference ROS_Cfam_1.0

Range

15280409..15318046 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038664736.1 → XP_038520664.1 ubiquitin conjugation factor E4 A

UniProtKB/TrEMBL

A0A8P0TN78

Related

ENSCAFP00845003318.1, ENSCAFT00845004148.1

Conserved Domains (2) summary

cd16657
Location:990 → 1059

RING-Ubox_UBE4A; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 A (UBE4A) and similar proteins

pfam10408
Location:330 → 971

Ufd2P_core; Ubiquitin elongating factor core

Alternate UMICH_Zoey_3.1

Genomic

NC_049265.1 Alternate UMICH_Zoey_3.1

Range

15418864..15456318 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038474869.1 → XP_038330797.1 ubiquitin conjugation factor E4 A

Conserved Domains (2) summary

cd16657
Location:990 → 1059

RING-Ubox_UBE4A; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 A (UBE4A) and similar proteins

pfam10408
Location:330 → 971

Ufd2P_core; Ubiquitin elongating factor core

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049746.1 Alternate UNSW_CanFamBas_1.0

Range

15322601..15359769 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038600199.1 → XP_038456127.1 ubiquitin conjugation factor E4 A

Conserved Domains (2) summary

cd16657
Location:990 → 1059

RING-Ubox_UBE4A; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 A (UBE4A) and similar proteins

pfam10408
Location:330 → 971

Ufd2P_core; Ubiquitin elongating factor core

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049226.1 Alternate UU_Cfam_GSD_1.0

Range

15363227..15400919 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038535996.1 → XP_038391924.1 ubiquitin conjugation factor E4 A

UniProtKB/TrEMBL

A0A8P0TN78

Conserved Domains (2) summary

cd16657
Location:990 → 1059

RING-Ubox_UBE4A; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 A (UBE4A) and similar proteins

pfam10408
Location:330 → 971

Ufd2P_core; Ubiquitin elongating factor core

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

15389033..15426486 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_844988.6 → XP_850081.1 ubiquitin conjugation factor E4 A

UniProtKB/TrEMBL

A0A8P0TN78

Conserved Domains (2) summary

cd16657
Location:990 → 1059

RING-Ubox_UBE4A; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 A (UBE4A) and similar proteins

pfam10408
Location:330 → 971

Ufd2P_core; Ubiquitin elongating factor core