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PUS3 pseudouridine synthase 3 [ Canis lupus familiaris (dog) ]

Gene ID: 479397, updated on 17-Aug-2024

Summary

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Official Symbol
PUS3provided by VGNC
Official Full Name
pseudouridine synthase 3provided by VGNC
Primary source
VGNC:VGNC:45212
See related
Ensembl:ENSCAFG00845010225
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (8543726..8554694)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (8647666..8658403)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (8619943..8630897)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (8611659..8622390)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (8585895..8596627)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene V-set and immunoglobulin domain containing 10 like 2 Neighboring gene DEAD-box helicase 25 Neighboring gene HYLS1 centriolar and ciliogenesis associated Neighboring gene uncharacterized LOC111095794 Neighboring gene prostate and testis expressed protein 2-like Neighboring gene prostate and testis expressed 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine(38/39) synthase
Names
pseudouridylate synthase 3
XP_013968784.2
XP_038330507.1
XP_038330508.1
XP_038391636.1
XP_038391637.1
XP_038455842.1
XP_038455843.1
XP_038520385.1
XP_038520386.1
XP_536533.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    8543726..8554694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038664458.1 → XP_038520386.1  tRNA pseudouridine(38/39) synthase isoform X2

    UniProtKB/TrEMBL
    A0A8C0KDM5, A0A8C0N6E0, A0A8C0N6N4, A0A8I3NGH2
    Related
    ENSCAFP00845014015.1, ENSCAFT00845017988.1
    Conserved Domains (1) summary
    cd02569
    Location:66 → 328
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

  2. XM_038664457.1 → XP_038520385.1  tRNA pseudouridine(38/39) synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0N6N4
    Conserved Domains (1) summary
    cd02569
    Location:104 → 366
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    8611659..8622390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038474580.1 → XP_038330508.1  tRNA pseudouridine(38/39) synthase isoform X2

    Conserved Domains (1) summary
    cd02569
    Location:66 → 328
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

  2. XM_038474579.1 → XP_038330507.1  tRNA pseudouridine(38/39) synthase isoform X1

    Conserved Domains (1) summary
    cd02569
    Location:104 → 366
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    8585895..8596627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038599915.1 → XP_038455843.1  tRNA pseudouridine(38/39) synthase isoform X2

    Conserved Domains (1) summary
    cd02569
    Location:66 → 328
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

  2. XM_038599914.1 → XP_038455842.1  tRNA pseudouridine(38/39) synthase isoform X1

    Conserved Domains (1) summary
    cd02569
    Location:104 → 366
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    8619943..8630897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038535709.1 → XP_038391637.1  tRNA pseudouridine(38/39) synthase isoform X2

    UniProtKB/TrEMBL
    A0A8C0KDM5, A0A8C0N6E0, A0A8C0N6N4, A0A8I3NGH2
    Conserved Domains (1) summary
    cd02569
    Location:66 → 328
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

  2. XM_038535708.1 → XP_038391636.1  tRNA pseudouridine(38/39) synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0N6N4
    Conserved Domains (1) summary
    cd02569
    Location:104 → 366
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    8647666..8658403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_536533.6 → XP_536533.1  tRNA pseudouridine(38/39) synthase isoform X2

    UniProtKB/TrEMBL
    A0A8C0KDM5, A0A8C0N6E0, A0A8C0N6N4, A0A8I3NGH2
    Conserved Domains (1) summary
    cd02569
    Location:66 → 328
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like

  2. XM_014113309.3 → XP_013968784.2  tRNA pseudouridine(38/39) synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0N6N4
    Conserved Domains (1) summary
    cd02569
    Location:104 → 366
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like
Nucleotide Protein
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