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CCIN calicin [ Pan troglodytes (chimpanzee) ]

Gene ID: 473231, updated on 17-Aug-2024

Summary

Official Symbol
CCINprovided by VGNC
Official Full Name
calicinprovided by VGNC
Primary source
VGNC:VGNC:4649
Locus tag
CK820_G0014323
See related
Ensembl:ENSPTRG00000029269
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 11 NC_072409.2 (79815279..79820610, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (39048108..39053439)

Chromosome 11 - NC_072409.2Genomic Context describing neighboring genes Neighboring gene clathrin light chain A Neighboring gene U4 spliceosomal RNA Neighboring gene glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase Neighboring gene uncharacterized LOC134807743 Neighboring gene GLI pathogenesis related 2 Neighboring gene reversion inducing cysteine rich protein with kazal motifs

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280286.1NP_001267215.1  calicin

    See identical proteins and their annotated locations for NP_001267215.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305858
    UniProtKB/TrEMBL
    G2HGJ4
    Related
    ENSPTRP00000049318.1, ENSPTRT00000056566.2
    Conserved Domains (7) summary
    smart00225
    Location:29128
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:133234
    BACK; BTB And C-terminal Kelch
    sd00038
    Location:317362
    Kelch; KELCH repeat [structural motif]
    pfam00651
    Location:18125
    BTB; BTB/POZ domain
    pfam01344
    Location:366404
    Kelch_1; Kelch motif
    pfam13418
    Location:515568
    Kelch_4; Galactose oxidase, central domain
    pfam13964
    Location:321364
    Kelch_6; Kelch motif

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072409.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    79815279..79820610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054657863.1XP_054513838.1  calicin isoform X1

    UniProtKB/TrEMBL
    A0A2J8QRS5, A0A6D2VTX9, H2R6P2