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EMB embigin [ Pan troglodytes (chimpanzee) ]

Gene ID: 461886, updated on 3-Apr-2024

Summary

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Official Symbol
EMBprovided by VGNC
Official Full Name
embiginprovided by VGNC
Primary source
VGNC:VGNC:3977
Locus tag
CK820_G0040561
See related
Ensembl:ENSPTRG00000016856
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See EMB in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (64221819..64283285)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (64647331..64710019)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112207284 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like 4C Neighboring gene protein FAM27D1-like Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
embigin
Names
embigin homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    64221819..64283285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054684375.2 → XP_054540350.1  embigin isoform X3

  2. XM_054684374.2 → XP_054540349.1  embigin isoform X1

  3. XM_016953332.4 → XP_016808821.2  embigin isoform X2

    UniProtKB/TrEMBL
    A0A2J8K921, H2QQV1, K7D426
    Conserved Domains (2) summary
    smart00410
    Location:172 → 254
    IG_like; Immunoglobulin like
    cl11960
    Location:82 → 143
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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