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SCD5 stearoyl-CoA desaturase 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 461211, updated on 17-Aug-2024

Summary

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Official Symbol
SCD5provided by VGNC
Official Full Name
stearoyl-CoA desaturase 5provided by VGNC
Primary source
VGNC:VGNC:2005
Locus tag
CK820_G0003625
See related
Ensembl:ENSPTRG00000016220
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (47348049..47517525)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (47348021..47517497)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104006051 Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene microRNA mir-575 Neighboring gene uncharacterized LOC107974256 Neighboring gene tyrosine-protein phosphatase non-receptor type 11-like Neighboring gene transmembrane protein 150C Neighboring gene small ribosomal subunit protein eS6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables stearoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in unsaturated fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stearoyl-CoA desaturase 5
Names
stearoyl-CoA desaturase 4
XP_001141318.1
XP_517188.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    47348049..47517525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001141318.6 → XP_001141318.1  stearoyl-CoA desaturase 5 isoform X1

    See identical proteins and their annotated locations for XP_001141318.1

    UniProtKB/TrEMBL
    A0A2J8PG65, A0A6D2WDV6, H2QPT0
    Related
    ENSPTRP00000027870.5
    Conserved Domains (1) summary
    cd03505
    Location:71 → 311
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

  2. XM_517188.8 → XP_517188.2  stearoyl-CoA desaturase 5 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PG70, A0A6D2YBB5, H2RFD4
    Related
    ENSPTRP00000060227.1
    Conserved Domains (1) summary
    cd03505
    Location:71 → 159
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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