DCP1A decapping mRNA 1A [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: DCP1Aprovided by VGNC
Official Full Name: decapping mRNA 1Aprovided by VGNC
Primary source: VGNC:VGNC:57668
Locus tag: CK820_G0004938
See related: Ensembl:ENSPTRG00000046314
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	2	NC_086015.1 (57331224..57395976, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	3	NC_072401.1 (57330904..57395644, complement)

Chromosome 2 - NC_086015.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH91253 (e-PCR)
- UniSTS:90633

RH78393 (e-PCR)
- UniSTS:89626

STS-N91450 (e-PCR)
- UniSTS:74524

D8S2279 (e-PCR)
- UniSTS:473907

STS-R01176 (e-PCR)
- UniSTS:5439

SHGC-154309 (e-PCR)
- UniSTS:178068

G16522 (e-PCR)
- UniSTS:37288

RH69821 (e-PCR)
- UniSTS:66247

SGC34070 (e-PCR)
- UniSTS:19662

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables enzyme activator activity	IEA Inferred from Electronic Annotation more info	PubMed
enables mRNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA	IEA Inferred from Electronic Annotation more info	PubMed
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of catalytic activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in P-body	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: mRNA-decapping enzyme 1A

Names: DCP1 decapping enzyme homolog A

XP_001173036.1

EC 3.6.1.62

XP_001173059.1

EC 3.6.1.62

XP_063662912.1

EC 3.6.1.62

XP_063662913.1

EC 3.6.1.62

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

57331224..57395976 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001173059.7 → XP_001173059.1 mRNA-decapping enzyme 1A isoform X1

See identical proteins and their annotated locations for XP_001173059.1

UniProtKB/TrEMBL

A0A2J8P821, A0A6D2X7C5, K7BVB0

Related

ENSPTRP00000092316.1

Conserved Domains (3) summary

cd09804
Location:6 → 126

Dcp1; mRNA decapping enzyme 1 (Dcp1)

pfam16741
Location:539 → 581

mRNA_decap_C; mRNA-decapping enzyme C-terminus

cl25496
Location:252 → 532

Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
XM_001173036.7 → XP_001173036.1 mRNA-decapping enzyme 1A isoform X2

See identical proteins and their annotated locations for XP_001173036.1

UniProtKB/TrEMBL

A0A2I3T0K1, A0A2J8P855, A0A6D2XNX5

Related

ENSPTRP00000082722.1

Conserved Domains (3) summary

cd09804
Location:6 → 126

Dcp1; mRNA decapping enzyme 1 (Dcp1)

pfam16741
Location:501 → 543

mRNA_decap_C; mRNA-decapping enzyme C-terminus

cl25496
Location:214 → 494

Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
XM_063806843.1 → XP_063662913.1 mRNA-decapping enzyme 1A isoform X4

UniProtKB/TrEMBL

A0A2I3T2H0
XM_063806842.1 → XP_063662912.1 mRNA-decapping enzyme 1A isoform X3

UniProtKB/TrEMBL

A0A2I3T2H0