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SPATA20 spermatogenesis associated 20 [ Pan troglodytes (chimpanzee) ]

Gene ID: 455125, updated on 17-Aug-2024

Summary

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Official Symbol
SPATA20provided by VGNC
Official Full Name
spermatogenesis associated 20provided by VGNC
Primary source
VGNC:VGNC:9702
Locus tag
CK820_G0021021
See related
Ensembl:ENSPTRG00000009404
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (63688398..63697208)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (61872887..61881663)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene MYCBP associated protein Neighboring gene uncharacterized LOC104002930 Neighboring gene epsin 3 Neighboring gene uncharacterized LOC107969270 Neighboring gene calcium voltage-gated channel subunit alpha1 G Neighboring gene uncharacterized LOC107969269 Neighboring gene ATP binding cassette subfamily C member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 20
Names
sperm protein SSP411

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    63688398..63697208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_511882.6 → XP_511882.2  spermatogenesis-associated protein 20 isoform X1

    See identical proteins and their annotated locations for XP_511882.2

    UniProtKB/TrEMBL
    A0A2J8MFX5, A0A6D2X4J3, K7AN05, K7D5C4
    Related
    ENSPTRP00000085966.1
    Conserved Domains (1) summary
    COG1331
    Location:73 → 800
    YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]

  2. XM_016932544.3 → XP_016788033.1  spermatogenesis-associated protein 20 isoform X4

  3. XM_001170636.6 → XP_001170636.1  spermatogenesis-associated protein 20 isoform X6

    See identical proteins and their annotated locations for XP_001170636.1

    UniProtKB/TrEMBL
    A0A2J8MFY5, G2HHU5
    Conserved Domains (1) summary
    COG1331
    Location:13 → 740
    YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]

  4. XM_001170552.6 → XP_001170552.1  spermatogenesis-associated protein 20 isoform X2

    See identical proteins and their annotated locations for XP_001170552.1

    UniProtKB/TrEMBL
    A0A2J8MFY9, A0A6D2Y6I7, H2QDF5, K7D5C4
    Related
    ENSPTRP00000015968.5
    Conserved Domains (1) summary
    COG1331
    Location:57 → 784
    YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]

  5. XM_063799837.1 → XP_063655907.1  spermatogenesis-associated protein 20 isoform X5

  6. XM_016932542.4 → XP_016788031.1  spermatogenesis-associated protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SEK9, A0A2J8MFY4, A0A6D2XP53, G2HHU5
    Conserved Domains (1) summary
    COG1331
    Location:57 → 784
    YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]

  7. XM_063799838.1 → XP_063655908.1  spermatogenesis-associated protein 20 isoform X7

  8. XM_063799836.1 → XP_063655906.1  spermatogenesis-associated protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SEK9, A0A2J8MFY4, A0A6D2XP53, G2HHU5

  9. XM_063799835.1 → XP_063655905.1  spermatogenesis-associated protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SEK9, A0A2J8MFY4, A0A6D2XP53, G2HHU5

  10. XM_063799839.1 → XP_063655909.1  spermatogenesis-associated protein 20 isoform X7

Nucleotide Protein
Heading Accession and Version

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