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NUP93 nucleoporin 93 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454107, updated on 17-Aug-2024

Summary

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Official Symbol
NUP93provided by VGNC
Official Full Name
nucleoporin 93provided by VGNC
Primary source
VGNC:VGNC:5859
Locus tag
CK820_G0016621
See related
Ensembl:ENSPTRG00000008142
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (54730212..54843222)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (54730118..54843120)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene developmental pluripotency-associated protein 2-like Neighboring gene metallothionein 1X Neighboring gene microRNA mir-138 Neighboring gene solute carrier family 12 member 3 Neighboring gene small ribosomal subunit protein eS24-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup93

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    54730212..54843222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_510982.8 → XP_510982.3  nuclear pore complex protein Nup93 isoform X1

    See identical proteins and their annotated locations for XP_510982.3

    UniProtKB/TrEMBL
    A0A2I3RNH3, A0A2J8MWE8, A0A2J8MWF1, A0A6D2WGM8, A0A6D2XUF3, H2QB59
    Related
    ENSPTRP00000013898.3
    Conserved Domains (1) summary
    pfam04097
    Location:220 → 802
    Nic96; Nup93/Nic96

  2. XM_003315114.6 → XP_003315162.1  nuclear pore complex protein Nup93 isoform X2

    See identical proteins and their annotated locations for XP_003315162.1

    UniProtKB/TrEMBL
    A0A2I3SYU6, A0A2J8MWH0, A0A6D2X5D1
    Related
    ENSPTRP00000082122.1
    Conserved Domains (1) summary
    pfam04097
    Location:97 → 679
    Nic96; Nup93/Nic96

  3. XM_003315115.6 → XP_003315163.1  nuclear pore complex protein Nup93 isoform X2

    See identical proteins and their annotated locations for XP_003315163.1

    UniProtKB/TrEMBL
    A0A2I3SYU6, A0A2J8MWH0, A0A6D2X5D1
    Conserved Domains (1) summary
    pfam04097
    Location:97 → 679
    Nic96; Nup93/Nic96
Nucleotide Protein
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