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TSPAN18 tetraspanin 18 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451141, updated on 17-Aug-2024

Summary

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Official Symbol
TSPAN18provided by VGNC
Official Full Name
tetraspanin 18provided by VGNC
Primary source
VGNC:VGNC:12764
Locus tag
CK820_G0028965
See related
Ensembl:ENSPTRG00000003531
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TSPAN18 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (48740169..48945816)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (48543795..48749312)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL8-like Neighboring gene CD82 molecule Neighboring gene uncharacterized LOC134807346 Neighboring gene uncharacterized LOC134807345 Neighboring gene uncharacterized LOC104008486 Neighboring gene uncharacterized LOC107967328 Neighboring gene tumor protein p53 inducible protein 11 Neighboring gene uncharacterized LOC129136419

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    48740169..48945816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001159889.7 → XP_001159889.2  tetraspanin-18 isoform X2

    See identical proteins and their annotated locations for XP_001159889.2

    UniProtKB/TrEMBL
    A0A2J8LHM5, A0A2J8LHN6, A0A6D2VZD9, H2Q3G6
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  2. XM_009460282.5 → XP_009458557.1  tetraspanin-18 isoform X2

    See identical proteins and their annotated locations for XP_009458557.1

    UniProtKB/TrEMBL
    A0A2J8LHM5, A0A2J8LHN6, A0A6D2VZD9, H2Q3G6
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  3. XM_009460283.5 → XP_009458558.1  tetraspanin-18 isoform X2

    See identical proteins and their annotated locations for XP_009458558.1

    UniProtKB/TrEMBL
    A0A2J8LHM5, A0A2J8LHN6, A0A6D2VZD9, H2Q3G6
    Related
    ENSPTRP00000006130.3
    Conserved Domains (2) summary
    cd03156
    Location:105 → 218
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 243
    Tetraspannin; Tetraspanin family

  4. XM_016920716.4 → XP_016776205.1  tetraspanin-18 isoform X1

    UniProtKB/TrEMBL
    A0A2J8LHN6
    Conserved Domains (2) summary
    cd03156
    Location:115 → 228
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:18 → 257
    Tetraspannin; Tetraspanin family

  5. XM_009460279.5 → XP_009458554.1  tetraspanin-18 isoform X1

    See identical proteins and their annotated locations for XP_009458554.1

    UniProtKB/TrEMBL
    A0A2J8LHN6
    Conserved Domains (2) summary
    cd03156
    Location:115 → 228
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:18 → 257
    Tetraspannin; Tetraspanin family

  6. XM_063783995.1 → XP_063640065.1  tetraspanin-18 isoform X1

    UniProtKB/TrEMBL
    A0A2J8LHN6
Nucleotide Protein
Heading Accession and Version

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