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Zfp560 zinc finger protein 560 [ Mus musculus (house mouse) ]

Gene ID: 434377, updated on 30-Apr-2024

Summary

Official Symbol
Zfp560provided by MGI
Official Full Name
zinc finger protein 560provided by MGI
Primary source
MGI:MGI:1915280
See related
Ensembl:ENSMUSG00000045519 AllianceGenome:MGI:1915280
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znf560; 2310030G09Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF778 (zinc finger protein 778). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E18 (RPKM 3.2), CNS E14 (RPKM 2.9) and 24 other tissues See more
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Genomic context

See Zfp560 in Genome Data Viewer
Location:
9 A3; 9 7.52 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (20256432..20296479, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (20345136..20385182, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 7 subfamily E member 177 Neighboring gene STARR-seq mESC enhancer starr_23456 Neighboring gene olfactory receptor family 7 subfamily E member 178 Neighboring gene STARR-positive B cell enhancer ABC_E9752 Neighboring gene zinc finger protein 26 Neighboring gene STARR-positive B cell enhancer ABC_E9753 Neighboring gene zinc finger protein 426 Neighboring gene predicted gene, 23316

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004190.3NP_001004190.2  zinc finger protein 778

    See identical proteins and their annotated locations for NP_001004190.2

    Status: PROVISIONAL

    Source sequence(s)
    AC166098
    Consensus CDS
    CCDS22877.1
    UniProtKB/TrEMBL
    Q3URI6
    Related
    ENSMUSP00000065620.8, ENSMUST00000068079.14
    Conserved Domains (6) summary
    smart00349
    Location:4197
    KRAB; krueppel associated box
    COG5048
    Location:276689
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:617637
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:279301
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:4180
    KRAB; KRAB box
    pfam13465
    Location:293318
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    20256432..20296479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030244440.2XP_030100300.1  zinc finger protein 778 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:70483
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:411431
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_030244441.2XP_030100301.1  zinc finger protein 778 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:70483
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:411431
    ZF_C2H2; C2H2 Zn finger [structural motif]