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NEMF nuclear export mediator factor [ Gallus gallus (chicken) ]

Gene ID: 428926, updated on 6-Jun-2024

Summary

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Symbol
NEMFprovided by CGNC
Full Name
nuclear export mediator factorprovided by CGNC
Primary source
CGNC:53513
See related
Ensembl:ENSGALG00010019172
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SDCCAG1
Annotation information
Annotation category: suggests misassembly
Orthologs
human mouse all
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Genomic context

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See NEMF in Genome Data Viewer
Location:
chromosome: 5
Exon count:
33
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (57436349..57456644, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (57311709..57332518, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 1 Neighboring gene kelch domain containing 2 Neighboring gene ADP ribosylation factor 6 Neighboring gene microRNA 1716

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of a chicken 5 K microarray targeted towards immune function. Smith J, et al. BMC Genomics, 2006 Mar 13. PMID 16533398, Free PMC Article
  2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosomal large subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rescue of stalled ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome-associated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RQC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosome quality control complex subunit NEMF; nuclear export mediator factor NEMF
Names
serologically defined colon cancer antigen 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252329.2 → NP_001239258.2  ribosome quality control complex subunit NEMF

    Status: VALIDATED

    Source sequence(s)
    AJ453550, AJ728583, AJ728588, AM067793, BG625319, BU213544, BU247990, BU325310, BU356261, BU356464, BU417576, BU421227, BU461542, HAEK01013820
    UniProtKB/TrEMBL
    A0A8V0Z307
    Related
    ENSGALP00010027613.1, ENSGALT00010046376.1
    Conserved Domains (2) summary
    COG1293
    Location:1 → 643
    YloA; Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains [Translation, ribosomal structure and biogenesis]
    COG5271
    Location:669 → 844
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    57436349..57456644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    57311709..57332518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918872.1 → XP_046774828.1  nuclear export mediator factor NEMF isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z307

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039328.1: Suppressed sequence

    Description
    NM_001039328.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein Strain
Heading Accession and Version

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