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ZKSCAN7 zinc finger with KRAB and SCAN domains 7 [ Gallus gallus (chicken) ]

Gene ID: 416664, updated on 17-Aug-2024

Summary

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Symbol
ZKSCAN7provided by CGNC
Full Name
zinc finger with KRAB and SCAN domains 7provided by CGNC
Primary source
CGNC:50314
See related
Ensembl:ENSGALG00010016332
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
PRDM9; ZNF167; ZNF436; ZKSCAN7L
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Genomic context

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Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (12436717..12440571, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (12431468..12436123, complement)

Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene cell death-inducing p53 target 1 Neighboring gene heme oxygenase 2 Neighboring gene uncharacterized LOC107054646 Neighboring gene SLX4 structure-specific endonuclease subunit homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase PRDM9; zinc finger protein 436; zinc finger protein 501
Names
PR domain containing 9
zinc finger protein 167
XP_004945438.2
XP_015150125.2
XP_040503647.1
XP_040503648.1
XP_040540097.1
XP_040540099.1
XP_046756686.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12436717..12440571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015294639.4 → XP_015150125.2  zinc finger protein 501 isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:110 → 383
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:205 → 225
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_004945381.5 → XP_004945438.2  zinc finger protein 501 isoform X1

    Related
    ENSGALP00010022668.1, ENSGALT00010039293.1
    Conserved Domains (2) summary
    COG5048
    Location:132 → 362
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:205 → 225
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_046900730.1 → XP_046756686.1  zinc finger protein 501 isoform X2

  4. XM_040647713.2 → XP_040503647.1  zinc finger protein 436 isoform X4

    Conserved Domains (2) summary
    COG5048
    Location:38 → 268
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:111 → 131
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_040647714.1 → XP_040503648.1  zinc finger protein 436 isoform X4

    Conserved Domains (2) summary
    COG5048
    Location:38 → 268
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:111 → 131
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12431468..12436123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040684165.2 → XP_040540099.1  zinc finger protein 501 isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:132 → 383
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:205 → 225
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_040684163.2 → XP_040540097.1  zinc finger protein 501 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:132 → 362
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:205 → 225
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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