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UBLCP1 ubiquitin like domain containing CTD phosphatase 1 [ Gallus gallus (chicken) ]

Gene ID: 416237, updated on 17-Aug-2024

Summary

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Symbol
UBLCP1provided by CGNC
Full Name
ubiquitin like domain containing CTD phosphatase 1provided by CGNC
Primary source
CGNC:2684
See related
Ensembl:ENSGALG00010014900
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (10216599..10229403, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (10218832..10231653, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene ovoinhibitor-like Neighboring gene serine protease inhibitor Kazal-type 6-like Neighboring gene ring finger protein 145 Neighboring gene EBF transcription factor 1 Neighboring gene uncharacterized LOC101749832

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like domain-containing CTD phosphatase 1
Names
nuclear proteasome inhibitor UBLCP1
NP_001025784.2
XP_015149251.1
XP_025010611.1
XP_025010612.1
XP_040502829.1
XP_046756304.1
XP_046782904.1
XP_046782905.1
XP_046782906.1
XP_046782907.1
XP_046782908.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030613.4 → NP_001025784.2  ubiquitin-like domain-containing CTD phosphatase 1

    See identical proteins and their annotated locations for NP_001025784.2

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000256
    UniProtKB/Swiss-Prot
    Q5ZJJ8
    Conserved Domains (2) summary
    TIGR02245
    Location:117 → 311
    HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
    cd01813
    Location:3 → 77
    Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10216599..10229403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293765.4 → XP_015149251.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8
    Conserved Domains (2) summary
    TIGR02245
    Location:117 → 311
    HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
    cd01813
    Location:3 → 77
    Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

  2. XM_025154843.3 → XP_025010611.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8
    Conserved Domains (2) summary
    TIGR02245
    Location:117 → 311
    HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
    cd01813
    Location:3 → 77
    Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

  3. XM_025154844.3 → XP_025010612.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8
    Related
    ENSGALP00010020802.1, ENSGALT00010035864.1
    Conserved Domains (2) summary
    TIGR02245
    Location:117 → 311
    HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
    cd01813
    Location:3 → 77
    Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

  4. XM_046900348.1 → XP_046756304.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8

  5. XM_040646895.2 → XP_040502829.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8
    Conserved Domains (2) summary
    TIGR02245
    Location:117 → 311
    HAD_IIID1; HAD-superfamily subfamily IIID hydrolase, TIGR02245
    cd01813
    Location:3 → 77
    Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    10218832..10231653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926948.1 → XP_046782904.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8

  2. XM_046926949.1 → XP_046782905.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8

  3. XM_046926951.1 → XP_046782907.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8

  4. XM_046926952.1 → XP_046782908.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8

  5. XM_046926950.1 → XP_046782906.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJJ8
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZJJ8.1 GenPept UniProtKB/Swiss-Prot:Q5ZJJ8

Gene LinkOut

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Molecular Biology Databases
Research Materials