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sall4 spalt-like transcription factor 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 407860, updated on 17-Aug-2024

Summary

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Official Symbol
sall4provided by Xenbase
Official Full Name
spalt-like transcription factor 4provided by Xenbase
Primary source
Xenbase:XB-GENE-485252
See related
Ensembl:ENSXETG00000012326
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
drrs; hsal4; znf797
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (35230283..35241212)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (27032604..27043530)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene teashirt zinc finger homeobox 2 Neighboring gene ZFP64 zinc finger protein Neighboring gene ATPase, class II, type 9A Neighboring gene nuclear factor of activated T cells 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC76059, MGC81541

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sal-like protein 4
Names
sal-like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001458.1 → NP_001001458.1  sal-like protein 4

    See identical proteins and their annotated locations for NP_001001458.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067314
    UniProtKB/TrEMBL
    A0A6I8QN79, Q6NX24
    Conserved Domains (3) summary
    sd00017
    Location:543 → 563
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:884 → 906
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:555 → 580
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    35230283..35241212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012971615.3 → XP_012827069.1  sal-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QN79, A0A8J0SPS9
    Conserved Domains (4) summary
    cd11674
    Location:769 → 860
    lambda-1; inner capsid protein lambda-1 or VP3
    sd00017
    Location:523 → 543
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:839 → 861
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:535 → 560
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012971614.3 → XP_012827068.1  sal-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QN79, A0A8J0SWV7
    Related
    ENSXETP00000069978.2, ENSXETT00000101415.2
    Conserved Domains (4) summary
    COG5048
    Location:320 → 707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:523 → 543
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:864 → 886
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:535 → 560
    zf-H2C2_2; Zinc-finger double domain

  3. XM_012971616.3 → XP_012827070.1  sal-like protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QN79, A0A8J0SZA9
    Conserved Domains (4) summary
    COG5048
    Location:321 → 708
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:524 → 544
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:865 → 887
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:536 → 561
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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