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sall4 spalt-like transcription factor 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 407860, updated on 9-Oct-2019

Summary

Official Symbol
sall4provided by Xenbase
Official Full Name
spalt-like transcription factor 4provided by Xenbase
Primary source
Xenbase:XB-GENE-485252
See related
Ensembl:ENSXETG00000001742
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
drrs; hsal4; znf797
Orthologs

Genomic context

See sall4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (27032604..27043530)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668245.1 (13900344..13911515, complement)

Chromosome 10 - NC_030686.1Genomic Context describing neighboring genes Neighboring gene teashirt zinc finger homeobox 2 Neighboring gene ZFP64 zinc finger protein Neighboring gene ATPase, class II, type 9A Neighboring gene nuclear factor of activated T cells 2

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC76059, MGC81541

General protein information

Preferred Names
sal-like protein 4
Names
sal-like 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001458.1NP_001001458.1  sal-like protein 4

    See identical proteins and their annotated locations for NP_001001458.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067314
    UniProtKB/TrEMBL
    Q6NX24
    Related
    ENSXETP00000018455.1, ENSXETT00000009894.1
    Conserved Domains (3) summary
    sd00017
    Location:543563
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:884906
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:555580
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030686.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    27032604..27043530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012971614.2XP_012827068.1  sal-like protein 4 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:320707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:523543
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:864886
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:535560
    zf-H2C2_2; Zinc-finger double domain
  2. XM_012971615.2XP_012827069.1  sal-like protein 4 isoform X2

    Conserved Domains (4) summary
    cd11674
    Location:769860
    lambda-1; inner capsid protein lambda-1 or VP3
    sd00017
    Location:523543
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:839861
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:535560
    zf-H2C2_2; Zinc-finger double domain
  3. XM_018097690.1XP_017953179.1  sal-like protein 4 isoform X3

    Related
    ENSXETP00000001077.1, ENSXETT00000009877.1
  4. XM_012971616.2XP_012827070.1  sal-like protein 4 isoform X4

    Related
    ENSXETP00000018438.1, ENSXETT00000009864.1
    Conserved Domains (4) summary
    COG5048
    Location:321708
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:524544
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:865887
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:536561
    zf-H2C2_2; Zinc-finger double domain
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