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CHRD chordin [ Gallus gallus (chicken) ]

Gene ID: 395828, updated on 6-Jun-2024

Summary

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Symbol
CHRDprovided by CGNC
Full Name
chordinprovided by CGNC
Primary source
CGNC:20229
See related
Ensembl:ENSGALG00010015908
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CHRD in Genome Data Viewer
Location:
chromosome: 9
Exon count:
24
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (15631546..15639089, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (15425281..15432822, complement)

Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 131 member A Neighboring gene heat shock protein family B (small) member 7 like Neighboring gene chloride voltage-gated channel 2 Neighboring gene thrombopoietin Neighboring gene RNA polymerase II subunit H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chordin regulates primitive streak development and the stability of induced neural cells, but is not sufficient for neural induction in the chick embryo. Streit A, et al. Development, 1998 Feb. PMID 9425145
  2. Tsukushi functions as an organizer inducer by inhibition of BMP activity in cooperation with chordin. Ohta K, et al. Dev Cell, 2004 Sep. PMID 15363410, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chordin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204980.4 → NP_990311.3  chordin precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000240
    UniProtKB/TrEMBL
    O57465
    Related
    ENSGALP00010022220.1, ENSGALT00010038423.1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    15631546..15639089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040705473.2 → XP_040561407.1  chordin isoform X3

    UniProtKB/TrEMBL
    A0A8V0YUA2
    Related
    ENSGALP00010022193.1, ENSGALT00010038382.1
    Conserved Domains (3) summary
    smart00214
    Location:736 → 802
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:498 → 619
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    pfam00093
    Location:657 → 714
    VWC; von Willebrand factor type C domain

  2. XM_040705472.1 → XP_040561406.1  chordin isoform X2

    UniProtKB/TrEMBL
    O57465
    Related
    ENSGALP00010022229.1, ENSGALT00010038437.1
    Conserved Domains (4) summary
    smart00214
    Location:737 → 803
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:499 → 620
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    pfam00093
    Location:658 → 715
    VWC; von Willebrand factor type C domain
    cl17735
    Location:5 → 78
    VWC; von Willebrand factor type C domain

  3. XM_046898322.1 → XP_046754278.1  chordin isoform X1

    UniProtKB/TrEMBL
    O57465

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    15425281..15432822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046923606.1 → XP_046779562.1  chordin isoform X3

    UniProtKB/TrEMBL
    A0A8V0YUA2

  2. XM_046923605.1 → XP_046779561.1  chordin isoform X2

    UniProtKB/TrEMBL
    O57465

  3. XM_046923604.1 → XP_046779560.1  chordin isoform X1

    UniProtKB/TrEMBL
    O57465
Nucleotide Protein Strain
Heading Accession and Version

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