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TPTEP1 TPTE pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 387590, updated on 23-Nov-2021

Summary

Official Symbol
TPTEP1provided by HGNC
Official Full Name
TPTE pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:43648
See related
Ensembl:ENSG00000100181
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
psiTPTE22
Expression
Broad expression in thyroid (RPKM 2.3), salivary gland (RPKM 2.1) and 24 other tissues See more
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Genomic context

See TPTEP1 in Genome Data Viewer
Location:
22q11.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (16601911..16648830)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (17082801..17129720)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene chaperonin containing TCP1 subunit 8 like 2 Neighboring gene fatty acid binding protein 5 pseudogene 11 Neighboring gene ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene Neighboring gene solute carrier family 25 member 15 pseudogene 5 Neighboring gene uncharacterized LOC112268292 Neighboring gene poly(ADP-ribose) polymerase family member 4 pseudogene 3 Neighboring gene ankyrin repeat domain 62 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • endogenous retroviral protease pseudogene
  • transmembrane phosphatase with tensin homology pseudogene 1

Clone Names

  • FLJ37713, MGC104374, AC005301.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001591.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AY219889
    Related
    ENST00000400593.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    16601911..16648830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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