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Zfp408 zinc finger protein 408 [ Mus musculus (house mouse) ]

Gene ID: 381410, updated on 12-Aug-2019

Summary

Official Symbol
Zfp408provided by MGI
Official Full Name
zinc finger protein 408provided by MGI
Primary source
MGI:MGI:2685857
See related
Ensembl:ENSMUSG00000075040
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1011
Expression
Ubiquitous expression in thymus adult (RPKM 13.6), ovary adult (RPKM 8.7) and 28 other tissues See more
Orthologs

Genomic context

See Zfp408 in Genome Data Viewer
Location:
2; 2 E1
Exon count:
7
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (91642756..91650051, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (91483845..91489948, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene cytoskeleton associated protein 5 Neighboring gene coagulation factor II Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial pseudogene Neighboring gene Rho GTPase activating protein 1 Neighboring gene autophagy related 13

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
nucleus ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033451.3NP_001028623.1  zinc finger protein 408 isoform 2

    See identical proteins and their annotated locations for NP_001028623.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate segment that results in the use of a downstream AUG compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AK132515, BF459039
    Consensus CDS
    CCDS16436.1
    UniProtKB/TrEMBL
    Q3V1D8
    Related
    ENSMUSP00000106965.1, ENSMUST00000111333.1
    Conserved Domains (3) summary
    COG5048
    Location:158407
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:361381
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:373398
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001347175.2NP_001334104.1  zinc finger protein 408 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL691489
    Consensus CDS
    CCDS84551.1
    UniProtKB/TrEMBL
    H7BX78
    Related
    ENSMUSP00000097301.3, ENSMUST00000099714.9

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p6 C57BL/6J

    Range
    91642756..91650051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251819.1XP_030107679.1  zinc finger protein 408 isoform X1

  2. XM_030251817.1XP_030107677.1  zinc finger protein 408 isoform X1

  3. XM_011239644.3XP_011237946.1  zinc finger protein 408 isoform X1

    See identical proteins and their annotated locations for XP_011237946.1

    Conserved Domains (3) summary
    COG5048
    Location:33282
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:236256
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:248273
    zf-H2C2_2; Zinc-finger double domain
  4. XM_030251815.1XP_030107675.1  zinc finger protein 408 isoform X1

  5. XM_006499832.3XP_006499895.1  zinc finger protein 408 isoform X1

    See identical proteins and their annotated locations for XP_006499895.1

    Conserved Domains (3) summary
    COG5048
    Location:33282
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:236256
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:248273
    zf-H2C2_2; Zinc-finger double domain
  6. XM_030251818.1XP_030107678.1  zinc finger protein 408 isoform X1

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