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FKBP9P1 FKBP prolyl isomerase 9 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 360132, updated on 12-Oct-2019

Summary

Official Symbol
FKBP9P1provided by HGNC
Official Full Name
FKBP prolyl isomerase 9 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:23568
See related
Ensembl:ENSG00000176826
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FKBP9L
Expression
Ubiquitous expression in placenta (RPKM 7.0), gall bladder (RPKM 6.2) and 24 other tissues See more

Genomic context

See FKBP9P1 in Genome Data Viewer
Location:
7p11.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (55681074..55704567, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (55748767..55772260, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene tubulin beta class I pseudogene 6 Neighboring gene ankyrin repeat domain 26 pseudogene Neighboring gene RNA, U6 small nuclear 389, pseudogene Neighboring gene FKBP prolyl isomerase 10 pseudogene Neighboring gene SUMO2 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • FK506 binding protein 9 pseudogene 1
  • FK506 binding protein 9-like

Clone Names

  • MGC20531

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003949.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate 5' exon but includes 3 extra alternate exons at the 5' end, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    BC011872, BM041005
  2. NR_027339.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    AK312981, BC011872, BM014562
  3. NR_027340.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate 5' exon and an alternate splice site, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    AK312981, BC011872
  4. NR_027342.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5' exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    BC011872
    Related
    ENST00000455909.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    55681074..55704567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182827.1: Suppressed sequence

    Description
    NM_182827.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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