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CCDC36 coiled-coil domain containing 36 [ Homo sapiens (human) ]

Gene ID: 339834, updated on 12-Aug-2018

Summary

Official Symbol
CCDC36provided by HGNC
Official Full Name
coiled-coil domain containing 36provided by HGNC
Primary source
HGNC:HGNC:27945
See related
Ensembl:ENSG00000173421 Vega:OTTHUMG00000155920
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT74
Expression
Biased expression in testis (RPKM 12.6), fat (RPKM 1.6) and 1 other tissue See more
Orthologs

Genomic context

See CCDC36 in Genome Data Viewer
Location:
3p21.31
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 3 NC_000003.12 (49198428..49258104)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (49235861..49295636)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene kelch domain containing 8B Neighboring gene chromosome 3 open reading frame 84 Neighboring gene chromosome 3 open reading frame 62 Neighboring gene microRNA 4271 Neighboring gene ubiquitin specific peptidase 4 Neighboring gene Sjoegren syndrome nuclear autoantigen 1 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25320

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
DNA recombination IEA
Inferred from Electronic Annotation
more info
 
meiotic DNA double-strand break formation ISS
Inferred from Sequence or Structural Similarity
more info
 
oogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of homologous chromosome segregation ISS
Inferred from Sequence or Structural Similarity
more info
 
spermatogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
synapsis ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
condensed nuclear chromosome ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
interactor of HORMAD1 protein 1
Names
cancer/testis antigen 74
coiled-coil domain-containing protein 36

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135197.1NP_001128669.1  interactor of HORMAD1 protein 1

    See identical proteins and their annotated locations for NP_001128669.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AA858032, AK303033, BC036202
    Consensus CDS
    CCDS33755.2
    UniProtKB/Swiss-Prot
    Q8IYA8
    UniProtKB/TrEMBL
    B4DZP6
    Related
    ENSP00000407837.2, OTTHUMP00000208932, ENST00000452691.6, OTTHUMT00000342332
    Conserved Domains (1) summary
    pfam15771
    Location:30591
    DUF4700; Domain of unknown function (DUF4700)
  2. NM_178173.3NP_835467.2  interactor of HORMAD1 protein 1

    See identical proteins and their annotated locations for NP_835467.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AA858032, BC036202
    Consensus CDS
    CCDS33755.2
    UniProtKB/Swiss-Prot
    Q8IYA8
    Related
    ENSP00000296449.5, OTTHUMP00000208933, ENST00000296449.9, OTTHUMT00000342333
    Conserved Domains (1) summary
    pfam15771
    Location:30591
    DUF4700; Domain of unknown function (DUF4700)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p12 Primary Assembly

    Range
    49198428..49258104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011533672.2XP_011531974.1  interactor of HORMAD1 protein 1 isoform X3

    See identical proteins and their annotated locations for XP_011531974.1

    UniProtKB/Swiss-Prot
    Q8IYA8
    Related
    ENSP00000391788.1, ENST00000438782.5
    Conserved Domains (1) summary
    pfam15771
    Location:30591
    DUF4700; Domain of unknown function (DUF4700)
  2. XM_011533673.2XP_011531975.1  interactor of HORMAD1 protein 1 isoform X3

    See identical proteins and their annotated locations for XP_011531975.1

    UniProtKB/Swiss-Prot
    Q8IYA8
    Conserved Domains (1) summary
    pfam15771
    Location:30591
    DUF4700; Domain of unknown function (DUF4700)
  3. XM_006713124.3XP_006713187.1  interactor of HORMAD1 protein 1 isoform X3

    See identical proteins and their annotated locations for XP_006713187.1

    UniProtKB/Swiss-Prot
    Q8IYA8
    Conserved Domains (1) summary
    pfam15771
    Location:30591
    DUF4700; Domain of unknown function (DUF4700)
  4. XM_011533670.2XP_011531972.1  interactor of HORMAD1 protein 1 isoform X1

    Conserved Domains (1) summary
    pfam15771
    Location:37598
    DUF4700; Domain of unknown function (DUF4700)
  5. XM_011533671.2XP_011531973.1  interactor of HORMAD1 protein 1 isoform X2

    Conserved Domains (1) summary
    pfam15771
    Location:37596
    DUF4700; Domain of unknown function (DUF4700)
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