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chtopa chromatin target of PRMT1a [ Danio rerio (zebrafish) ]

Gene ID: 321491, updated on 18-Sep-2024

Summary

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Official Symbol
chtopaprovided by ZNC
Official Full Name
chromatin target of PRMT1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-210
See related
Ensembl:ENSDARG00000057234 AllianceGenome:ZFIN:ZDB-GENE-030131-210
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb17a05; zgc:55292; wu:fb17a05; wu:fi05e09
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nuclear speck. Orthologous to human CHTOP (chromatin target of PRMT1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See chtopa in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (23897666..23918122, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (24313443..24333896, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 92 Neighboring gene microtubule associated tyrosine carboxypeptidase 2 Neighboring gene SNAP associated protein Neighboring gene SMAD family member 10a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
chromatin target of PRMT1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199546.1 → NP_955840.1  chromatin target of PRMT1a

    See identical proteins and their annotated locations for NP_955840.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045295
    UniProtKB/TrEMBL
    A0A8M1PD08, Q7ZW44
    Related
    ENSDARP00000074293.3, ENSDART00000079842.5
    Conserved Domains (1) summary
    pfam13865
    Location:194 → 228
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    23897666..23918122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467993.2 → XP_021323668.1  chromatin target of PRMT1a isoform X1

    UniProtKB/TrEMBL
    A0A8M9PAT6
    Conserved Domains (1) summary
    pfam13865
    Location:273 → 305
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1
Nucleotide Protein Strain
Heading Accession and Version

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