Format

Send to:

Choose Destination

ZNF354C zinc finger protein 354C [ Homo sapiens (human) ]

Gene ID: 30832, updated on 7-Jun-2020

Summary

Official Symbol
ZNF354Cprovided by HGNC
Official Full Name
zinc finger protein 354Cprovided by HGNC
Primary source
HGNC:HGNC:16736
See related
Ensembl:ENSG00000177932
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KID3
Expression
Ubiquitous expression in ovary (RPKM 3.8), thyroid (RPKM 3.7) and 25 other tissues See more
Orthologs

Genomic context

See ZNF354C in Genome Data Viewer
Location:
5q35.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (179060373..179083977)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (178487607..178510022)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 2 pseudogene Neighboring gene zinc finger protein 879 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 2 Neighboring gene Sharpr-MPRA regulatory region 9172 Neighboring gene uncharacterized LOC105377759

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
nuclear membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
zinc finger protein 354C
Names
KRAB-zinc finger protein synten
kidney, ischemia, and developmentally-regulated protein 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014594.3NP_055409.1  zinc finger protein 354C

    See identical proteins and their annotated locations for NP_055409.1

    Status: VALIDATED

    Source sequence(s)
    AC104117, AF525463, AK124385, BC063312, CN482682, DA393183, DA527405, DA548517
    Consensus CDS
    CCDS4443.1
    UniProtKB/Swiss-Prot
    Q86Y25
    Related
    ENSP00000324064.6, ENST00000315475.7
    Conserved Domains (5) summary
    smart00349
    Location:1272
    KRAB; krueppel associated box
    COG5048
    Location:242541
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:218238
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1251
    KRAB; KRAB box
    pfam13465
    Location:454479
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    179060373..179083977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017009409.1XP_016864898.1  zinc finger protein 354C isoform X1

    UniProtKB/Swiss-Prot
    Q86Y25
    Conserved Domains (5) summary
    smart00349
    Location:1272
    KRAB; krueppel associated box
    COG5048
    Location:242541
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:218238
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1251
    KRAB; KRAB box
    pfam13465
    Location:454479
    zf-H2C2_2; Zinc-finger double domain
Support Center