Pgap6 post-GPI attachment to proteins 6 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pgap6provided by RGD
Official Full Name: post-GPI attachment to proteins 6provided by RGD
Primary source: RGD:1311395
See related: EnsemblRapid:ENSRNOG00000020374 AllianceGenome:RGD:1311395
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: M83; Tmem8; Tmem8a
Summary: Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human PGAP6 (post-glycosylphosphatidylinositol attachment to proteins 6). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Kidney (RPKM 169.3), Testes (RPKM 28.1) and 6 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 10q12

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (15643081..15652912)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (15138918..15148431)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (15484952..15495380)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: post-GPI attachment to proteins factor 6

Names: post-glycosylphosphatidylinositol attachment to proteins 6; transmembrane protein 8 (five membrane-spanning domains); transmembrane protein 8A; type I transmembrane protein

NP_001100461.1

EC 3.1.1.4

XP_063125016.1

EC 3.1.1.4

XP_063125017.1

EC 3.1.1.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.