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LINC00907 long intergenic non-protein coding RNA 907 [ Homo sapiens (human) ]

Gene ID: 284260, updated on 13-May-2022

Summary

Official Symbol
LINC00907provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 907provided by HGNC
Primary source
HGNC:HGNC:44327
See related
Ensembl:ENSG00000267586 AllianceGenome:HGNC:44327
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00907 in Genome Data Viewer
Location:
18q12.3
Exon count:
16
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (42186668..42691426)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (42378345..42883242)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (39766633..40271391)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 3-kinase catalytic subunit type 3 Neighboring gene uncharacterized LOC124904350 Neighboring gene RNA, 5S ribosomal pseudogene 454 Neighboring gene uncharacterized LOC124904351 Neighboring gene Ras like without CAAX 2 Neighboring gene synaptotagmin 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genetics of coronary artery calcification among African Americans, a meta-analysis.
EBI GWAS Catalog
Genome-wide association study of chronic periodontitis in a general German population.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog
The genetic architecture of economic and political preferences.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046174.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) consists of most exons.
    Source sequence(s)
    AB593074, AC090239, BC021928
    Related
    ENST00000589068.5
  2. NR_046454.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and has a shorter and distinct 3' sequence, compared to variant 1.
    Source sequence(s)
    AC090239, BC040725
    Related
    ENST00000585639.5
  3. NR_046456.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has an additional internal exon and a longer and distinct 3' sequence, compared to variant 1.
    Source sequence(s)
    AB593072, AB593074, AC015670, AC090239
    Related
    ENST00000593234.5
  4. NR_046457.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in an internal region and the 3' region, compared to variant 1.
    Source sequence(s)
    AB593075, AC015670, AC090239
    Related
    ENST00000593051.5
  5. NR_046458.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) has a shorter and distinct 3' sequence, compared to variant 1.
    Source sequence(s)
    AB593074, AC090239

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    42186668..42691426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    42378345..42883242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_046455.1: Suppressed sequence

    Description
    NR_046455.1: This RefSeq was removed because it is primarily intronic sequence.