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ALOX12P2 arachidonate 12-lipoxygenase pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 245, updated on 1-Jun-2020

Summary

Official Symbol
ALOX12P2provided by HGNC
Official Full Name
arachidonate 12-lipoxygenase pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:432
See related
Ensembl:ENSG00000262943
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALOX12E
Expression
Broad expression in testis (RPKM 1.2), thyroid (RPKM 0.7) and 14 other tissues See more

Genomic context

See ALOX12P2 in Genome Data Viewer
Location:
17p13.1
Exon count:
16
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (6853576..6900349)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (6756895..6803668)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene GATA motif-containing MPRA enhancer 34 Neighboring gene tektin 1 Neighboring gene Spi-C transcription factor (Spi-1/PU.1 related) pseudogene Neighboring gene ALOX12 antisense RNA 1 Neighboring gene arachidonate 12-lipoxygenase, 12S type

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.
NHGRI GWA Catalog

General gene information

Markers

Other Names

  • 12-lipoxygenase-related protein
  • hair and skin epidermal-type 12-lipoxygenase-related pseudogene

Clone Names

  • MGC43625

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002710.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC027763, AL832768, BC041851
  2. NR_120453.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and includes two alternate exons, compared to variant 1.
    Source sequence(s)
    AF020774, AL832768, BC041851, BU689660, DB019000
    Related
    ENST00000570890.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    6853576..6900349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001072.1: Suppressed sequence

    Description
    NG_001072.1: This RefSeq was permanently suppressed because it represents a genomic segment and is replaced by a transcribed pseudogene with multiple exons.
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