SLC39A14 solute carrier family 39 member 14 [Homo sapiens (human)] - Gene

Summary

Official Symbol: SLC39A14provided by HGNC
Official Full Name: solute carrier family 39 member 14provided by HGNC
Primary source: HGNC:HGNC:20858
See related: Ensembl:ENSG00000104635 MIM:608736; AllianceGenome:HGNC:20858
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: HCIN; NET34; ZIP14; cig19; HMNDYT2; LZT-Hs4
Summary: This gene encodes a member of the the SLC39A family of divalent metal transporters that mediates the cellular uptake of manganese, zinc, iron, and cadmium. The encoded protein contains eight transmembrane domains, a histidine-rich motif, and a metalloprotease motif, and is expressed on the plasma membrane and the endocytic vesicle membrane. It is an important transporter of nontransferrin-bound iron and a critical regulator of manganese homeostasis. Naturally occurring mutations in this gene are associated with neurodegeneration with brain iron accumulation and early-onset parkinsonism-dystonia with hypermanganesemia. [provided by RefSeq, May 2017]
Expression: Broad expression in liver (RPKM 83.2), duodenum (RPKM 51.4) and 20 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 8p21.3

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	8	NC_000008.11 (22367278..22434129)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	8	NC_060932.1 (22641238..22707959)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	8	NC_000008.10 (22224791..22291642)

Chromosome 8 - NC_000008.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Hereditary Disorders of Manganese Metabolism: Pathophysiology of Childhood-Onset Dystonia-Parkinsonism in SLC39A14 Mutation Carriers and Genetic Animal Models.
Title: Hereditary Disorders of Manganese Metabolism: Pathophysiology of Childhood-Onset Dystonia-Parkinsonism in SLC39A14 Mutation Carriers and Genetic Animal Models.
Calcium and the Ca-ATPase SPCA1 modulate plasma membrane abundance of ZIP8 and ZIP14 to regulate Mn(II) uptake in brain microvascular endothelial cells.
Title: Calcium and the Ca-ATPase SPCA1 modulate plasma membrane abundance of ZIP8 and ZIP14 to regulate Mn(II) uptake in brain microvascular endothelial cells.
Circ_000829 Plays an Anticancer Role in Renal Cell Carcinoma by Suppressing SRSF1-Mediated Alternative Splicing of SLC39A14.
Title: Circ_000829 Plays an Anticancer Role in Renal Cell Carcinoma by Suppressing SRSF1-Mediated Alternative Splicing of SLC39A14.
Manganese transport in mammals by zinc transporter family proteins, ZNT and ZIP.
Title: Manganese transport in mammals by zinc transporter family proteins, ZNT and ZIP.
Human placental cell line HTR-8/SVneo accumulates cadmium by divalent metal transporters DMT1 and ZIP14.
Title: Human placental cell line HTR-8/SVneo accumulates cadmium by divalent metal transporters DMT1 and ZIP14.
Knockdown of Circ_SLC39A8 protects against the progression of osteoarthritis by regulating miR-591/IRAK3 axis.
Title: Knockdown of Circ_SLC39A8 protects against the progression of osteoarthritis by regulating miR-591/IRAK3 axis.
HIF-1alpha Dependent Upregulation of ZIP8, ZIP14, and TRPA1 Modify Intracellular Zn(2+) Accumulation in Inflammatory Synoviocytes.
Title: HIF-1α Dependent Upregulation of ZIP8, ZIP14, and TRPA1 Modify Intracellular Zn(2+) Accumulation in Inflammatory Synoviocytes.
Circular RNA circ_001842 plays an oncogenic role in renal cell carcinoma by disrupting microRNA-502-5p-mediated inhibition of SLC39A14.
Title: Circular RNA circ_001842 plays an oncogenic role in renal cell carcinoma by disrupting microRNA-502-5p-mediated inhibition of SLC39A14.
The Functions of ZIP8, ZIP14, and ZnT10 in the Regulation of Systemic Manganese Homeostasis.
Title: The Functions of ZIP8, ZIP14, and ZnT10 in the Regulation of Systemic Manganese Homeostasis.
solute carriers ZIP8 and ZIP14 regulate manganese accumulation in brain microvascular endothelial cells and control brain manganese levels
Title: The solute carriers ZIP8 and ZIP14 regulate manganese accumulation in brain microvascular endothelial cells and control brain manganese levels.

Submit: New GeneRIF Correction See all GeneRIFs (35)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description	Tests
Hypermanganesemia with dystonia 2 MedGen: C4310765 OMIM: 617013 GeneReviews: SLC39A14 Deficiency	Compare labs
Hyperostosis cranialis interna MedGen: C1840404 OMIM: 144755 GeneReviews: Not available	Compare labs

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

HIV-1 interactions

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Protein interactions

Protein	Gene	Interaction	Pubs
Tat	tat	Microarray analysis indicates HIV-1 Tat-induced upregulation of solute carrier family 39, member 14 (SLC39A14) in primary human brain microvascular endothelial cells	PubMed

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

A009B38 (e-PCR)
- UniSTS:72961

RH11601 (e-PCR)
- UniSTS:75266

D8S1931 (e-PCR)
- UniSTS:12572

D8S439 (e-PCR), detects polymorphism
- UniSTS:53279

D8S1587 (e-PCR)
- UniSTS:59973

RH25295 (e-PCR)
- UniSTS:91981

1684 (e-PCR)
- UniSTS:51289

SHGC-56581 (e-PCR)
- UniSTS:20836

D8S1419E (e-PCR)
- UniSTS:151207

SLC39A14_3803 (e-PCR)
- UniSTS:462544

RH16598 (e-PCR)
- UniSTS:58067

G32392 (e-PCR)
- UniSTS:116980

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables cadmium ion transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables ferrous iron transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables iron ion transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables manganese ion transmembrane transporter activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables monoatomic anion:monoatomic cation symporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables monoatomic cation:bicarbonate symporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables monoatomic cation:bicarbonate symporter activity	IDA Inferred from Direct Assay more info	PubMed
enables zinc ion transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables zinc ion transmembrane transporter activity	IDA Inferred from Direct Assay more info	PubMed
enables zinc ion transmembrane transporter activity	TAS Traceable Author Statement more info

Process	Evidence Code	Pubs
involved_in bicarbonate transport	IEA Inferred from Electronic Annotation more info
involved_in cadmium ion transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in cellular response to glucose stimulus	ISS Inferred from Sequence or Structural Similarity more info
involved_in cellular response to insulin stimulus	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of chondrocyte differentiation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of gluconeogenesis	ISS Inferred from Sequence or Structural Similarity more info
involved_in import across plasma membrane	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in inorganic cation transmembrane transport	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of insulin receptor signaling pathway	ISS Inferred from Sequence or Structural Similarity more info
involved_in intracellular zinc ion homeostasis	IDA Inferred from Direct Assay more info	PubMed
involved_in iron import into cell	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in iron ion transmembrane transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in manganese ion homeostasis	ISS Inferred from Sequence or Structural Similarity more info
involved_in manganese ion transmembrane transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in monoatomic anion transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of cyclic-nucleotide phosphodiesterase activity	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of G protein-coupled receptor signaling pathway	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of regulation of hormone levels	ISS Inferred from Sequence or Structural Similarity more info
involved_in zinc ion import across plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
involved_in zinc ion import across plasma membrane	IDA Inferred from Direct Assay more info	PubMed
involved_in zinc ion transmembrane transport	IDA Inferred from Direct Assay more info	PubMed
involved_in zinc ion transmembrane transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in zinc ion transmembrane transport	TAS Traceable Author Statement more info

Component	Evidence Code	Pubs
located_in apical plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in basolateral plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in early endosome membrane	IDA Inferred from Direct Assay more info	PubMed
located_in late endosome membrane	IDA Inferred from Direct Assay more info	PubMed
located_in lysosomal membrane	IDA Inferred from Direct Assay more info	PubMed
located_in membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	TAS Traceable Author Statement more info

General protein information

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Preferred Names: metal cation symporter ZIP14

Names: LIV-1 subfamily of ZIP zinc transporter 4; Zinc transporter ZIP14; Zrt-, Irt-like protein 14; solute carrier family 39 (metal ion transporter), member 14; solute carrier family 39 (zinc transporter), member 14; zinc transporter 14; zrt- and Irt-like protein 14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

NG_054890.1 RefSeqGene

Range

5030..60488

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001128431.4 → NP_001121903.1 metal cation symporter ZIP14 isoform a precursor

See identical proteins and their annotated locations for NP_001121903.1

Status: REVIEWED

Source sequence(s)

AA181885, AK172810, D31887, DC323208

Consensus CDS

CCDS47823.1

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1

Related

ENSP00000370635.1, ENST00000381237.6

Conserved Domains (1) summary

pfam02535
Location:151 → 483

Zip; ZIP Zinc transporter
NM_001135153.3 → NP_001128625.1 metal cation symporter ZIP14 isoform a precursor

See identical proteins and their annotated locations for NP_001128625.1

Status: REVIEWED

Source sequence(s)

AA181885, AC087854, AK295807, DC423882

Consensus CDS

CCDS47823.1

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1

Related

ENSP00000289952.5, ENST00000289952.9

Conserved Domains (1) summary

pfam02535
Location:151 → 483

Zip; ZIP Zinc transporter
NM_001135154.3 → NP_001128626.1 metal cation symporter ZIP14 isoform c precursor

See identical proteins and their annotated locations for NP_001128626.1

Status: REVIEWED

Source sequence(s)

BC015770, DC323208

Consensus CDS

CCDS47822.1

UniProtKB/TrEMBL

A0A0S2Z534, A0A0S2Z5Z7

Related

ENSP00000240095.6, ENST00000240095.10

Conserved Domains (2) summary

pfam02535
Location:151 → 445

Zip; ZIP Zinc transporter

pfam13900
Location:450 → 480

GVQW; Putative domain of unknown function
NM_001351655.2 → NP_001338584.1 metal cation symporter ZIP14 isoform a precursor

Status: REVIEWED

Source sequence(s)

AA181885, AC087854, AC105910

Consensus CDS

CCDS47823.1

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1

Conserved Domains (1) summary

pfam02535
Location:151 → 483

Zip; ZIP Zinc transporter
NM_001351656.2 → NP_001338585.1 metal cation symporter ZIP14 isoform a precursor

Status: REVIEWED

Source sequence(s)

AA181885, AC087854, AC105910

Consensus CDS

CCDS47823.1

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1

Conserved Domains (1) summary

pfam02535
Location:151 → 483

Zip; ZIP Zinc transporter
NM_001351657.2 → NP_001338586.1 metal cation symporter ZIP14 isoform d

Status: REVIEWED

Source sequence(s)

AA181885, AC087854, AC105910

UniProtKB/TrEMBL

A0A0S2Z5B1

Conserved Domains (1) summary

pfam02535
Location:161 → 493

Zip; ZIP Zinc transporter
NM_001351658.2 → NP_001338587.1 metal cation symporter ZIP14 isoform d

Status: REVIEWED

Source sequence(s)

AA181885, AC087854, AC105910

UniProtKB/TrEMBL

A0A0S2Z5B1

Conserved Domains (1) summary

pfam02535
Location:161 → 493

Zip; ZIP Zinc transporter
NM_001351659.2 → NP_001338588.1 metal cation symporter ZIP14 isoform d

Status: REVIEWED

Source sequence(s)

AA181885, AC087854, AC105910, DC369996

UniProtKB/TrEMBL

A0A0S2Z5B1

Conserved Domains (1) summary

pfam02535
Location:161 → 493

Zip; ZIP Zinc transporter
NM_001351660.2 → NP_001338589.1 metal cation symporter ZIP14 isoform a precursor

Status: REVIEWED

Source sequence(s)

AA181885, AC087854, AC105910

Consensus CDS

CCDS47823.1

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1

Conserved Domains (1) summary

pfam02535
Location:151 → 483

Zip; ZIP Zinc transporter
NM_015359.6 → NP_056174.2 metal cation symporter ZIP14 isoform b precursor

See identical proteins and their annotated locations for NP_056174.2

Status: REVIEWED

Source sequence(s)

AA181885, AK172810, D31887, DC323208

Consensus CDS

CCDS6030.1

UniProtKB/TrEMBL

A0A0S2Z5B1

Related

ENSP00000352779.5, ENST00000359741.10

Conserved Domains (1) summary

pfam02535
Location:151 → 483

Zip; ZIP Zinc transporter

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000008.11 Reference GRCh38.p14 Primary Assembly

Range

22367278..22434129

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006716324.4 → XP_006716387.1 metal cation symporter ZIP14 isoform X2

See identical proteins and their annotated locations for XP_006716387.1

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1

Conserved Domains (1) summary

pfam02535
Location:151 → 483

Zip; ZIP Zinc transporter
XM_047421654.1 → XP_047277610.1 metal cation symporter ZIP14 isoform X2

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1
XM_047421653.1 → XP_047277609.1 metal cation symporter ZIP14 isoform X1

UniProtKB/TrEMBL

A0A0S2Z5B1
XM_047421655.1 → XP_047277611.1 metal cation symporter ZIP14 isoform X2

UniProtKB/Swiss-Prot

A6NH98, B4DIW3, B6EU88, D3DSR4, Q15043, Q6ZME8, Q96BB3

UniProtKB/TrEMBL

A0A0S2Z5B1

Alternate T2T-CHM13v2.0

Genomic

NC_060932.1 Alternate T2T-CHM13v2.0

Range

22641238..22707959

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054360225.1 → XP_054216200.1 metal cation symporter ZIP14 isoform X2

UniProtKB/TrEMBL

A0A0S2Z5B1
XM_054360226.1 → XP_054216201.1 metal cation symporter ZIP14 isoform X2

UniProtKB/TrEMBL

A0A0S2Z5B1
XM_054360224.1 → XP_054216199.1 metal cation symporter ZIP14 isoform X1

UniProtKB/TrEMBL

A0A0S2Z5B1
XM_054360227.1 → XP_054216202.1 metal cation symporter ZIP14 isoform X2

UniProtKB/TrEMBL

A0A0S2Z5B1