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Ttc13 tetratricopeptide repeat domain 13 [ Mus musculus (house mouse) ]

Gene ID: 234875, updated on 2-Nov-2024

Summary

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Official Symbol
Ttc13provided by MGI
Official Full Name
tetratricopeptide repeat domain 13provided by MGI
Primary source
MGI:MGI:2384573
See related
Ensembl:ENSMUSG00000037300 AllianceGenome:MGI:2384573
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human TTC13 (tetratricopeptide repeat domain 13). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E18 (RPKM 6.6), thymus adult (RPKM 6.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Ttc13 in Genome Data Viewer
Location:
8 E2; 8 72.81 cM
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (125398066..125448748, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (124671327..124722011, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_23008 Neighboring gene calpain 9 Neighboring gene RIKEN cDNA 2310022B05 gene Neighboring gene VISTA enhancer mm1665 Neighboring gene predicted gene, 46058 Neighboring gene predicted gene, 30273 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:127246145-127246328 Neighboring gene ARV1 homolog, fatty acid homeostasis modulator Neighboring gene family with sequence similarity 89, member A Neighboring gene general transcription factor IIB pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC28881, MGC105232

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357355.2 → NP_001344284.1  tetratricopeptide repeat protein 13 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC135015, AC151736
    Consensus CDS
    CCDS90481.1
    UniProtKB/TrEMBL
    E9Q723, Q3UMK4
    Related
    ENSMUSP00000113383.3, ENSMUST00000118134.3
    Conserved Domains (2) summary
    COG0457
    Location:130 → 314
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:181 → 209
    TPR; TPR repeat [structural motif]

  2. NM_001357356.2 → NP_001344285.1  tetratricopeptide repeat protein 13 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC135015, AC151736
    Consensus CDS
    CCDS90480.1
    UniProtKB/TrEMBL
    A0A338P6N2, Q3UMK4
    Related
    ENSMUSP00000156040.2, ENSMUST00000231984.2
    Conserved Domains (2) summary
    COG0457
    Location:71 → 238
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:173 → 201
    TPR; TPR repeat [structural motif]

  3. NM_001357357.2 → NP_001344286.1  tetratricopeptide repeat protein 13 isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC135015, AC151736
    Consensus CDS
    CCDS90482.1
    UniProtKB/TrEMBL
    D3YVV0, Q3UMK4
    Related
    ENSMUSP00000114043.3, ENSMUST00000117624.9
    Conserved Domains (2) summary
    COG0457
    Location:99 → 260
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:164 → 189
    TPR; TPR repeat [structural motif]

  4. NM_001373939.1 → NP_001360868.1  tetratricopeptide repeat protein 13 isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AC135015, AC151736
    UniProtKB/TrEMBL
    Q3UMK4
    Conserved Domains (2) summary
    TIGR02917
    Location:104 → 403
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:234 → 262
    TPR; TPR repeat [structural motif]

  5. NM_001373940.1 → NP_001360869.1  tetratricopeptide repeat protein 13 isoform 6 precursor

    Status: VALIDATED

    Source sequence(s)
    AC135015, AC151736
    UniProtKB/TrEMBL
    Q3UMK4
    Conserved Domains (2) summary
    COG0457
    Location:130 → 314
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:181 → 209
    TPR; TPR repeat [structural motif]

  6. NM_001373941.1 → NP_001360870.1  tetratricopeptide repeat protein 13 isoform 7 precursor

    Status: VALIDATED

    Source sequence(s)
    AC135015, AC151736
    UniProtKB/TrEMBL
    Q3UMK4
    Related
    ENSMUSP00000038484.9, ENSMUST00000041614.15
    Conserved Domains (2) summary
    COG0457
    Location:71 → 238
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:173 → 201
    TPR; TPR repeat [structural motif]

  7. NM_001373943.1 → NP_001360872.1  tetratricopeptide repeat protein 13 isoform 5 precursor

    Status: VALIDATED

    Source sequence(s)
    AC135015, AC151736
    Consensus CDS
    CCDS90483.1
    UniProtKB/TrEMBL
    A0A1L1SSC7, Q3UMK4
    Related
    ENSMUSP00000149848.2, ENSMUST00000214828.2
    Conserved Domains (2) summary
    TIGR02917
    Location:104 → 403
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:234 → 262
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    125398066..125448748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153978.1 → XP_036009871.1  tetratricopeptide repeat protein 13 isoform X2

    UniProtKB/TrEMBL
    Q3UMK4
    Conserved Domains (2) summary
    TIGR02917
    Location:104 → 372
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:203 → 231
    TPR; TPR repeat [structural motif]

  2. XM_006530966.5 → XP_006531029.1  tetratricopeptide repeat protein 13 isoform X1

    UniProtKB/TrEMBL
    Q3UMK4
    Conserved Domains (2) summary
    TIGR02917
    Location:104 → 372
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:203 → 231
    TPR; TPR repeat [structural motif]

  3. XM_017312765.1 → XP_017168254.1  tetratricopeptide repeat protein 13 isoform X4

    UniProtKB/TrEMBL
    Q68FG8
    Conserved Domains (1) summary
    sd00006
    Location:26 → 56
    TPR; TPR repeat [structural motif]

  4. XM_036153979.1 → XP_036009872.1  tetratricopeptide repeat protein 13 isoform X3

    Conserved Domains (2) summary
    TIGR02917
    Location:104 → 403
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:234 → 262
    TPR; TPR repeat [structural motif]

RNA

  1. XR_001778436.2 RNA Sequence

  2. XR_878807.4 RNA Sequence

  3. XR_004934821.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_145607.3: Suppressed sequence

    Description
    NM_145607.3: This RefSeq was removed because currently there is insufficient support for the transcript and protein.
Nucleotide Protein Strain
Heading Accession and Version

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