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Conserved domains on  [gi|1735137162|ref|NP_001360869|]
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tetratricopeptide repeat protein 13 isoform 6 precursor [Mus musculus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 12138577)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
175-339 6.31e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 124.73  E-value: 6.31e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 175 IQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG0457     1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 333
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                  ....*.
gi 1735137162 334 YEGIKA 339
Cdd:COG0457   161 EEALEL 166
TPR_12 pfam13424
Tetratricopeptide repeat;
134-213 4.99e-03

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 4.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 134 IAYVLVGSGLYDEAIRHFSTMLQILSplgRINEAVNDLTkaiqlqpsARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam13424   9 LAAVLRRLGRYDEALELLEKALEIAR---RLLGPDHPLT--------ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
175-339 6.31e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 124.73  E-value: 6.31e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 175 IQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG0457     1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 333
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                  ....*.
gi 1735137162 334 YEGIKA 339
Cdd:COG0457   161 EEALEL 166
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 104-350 3.71e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 79.74  E-value: 3.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 104 EKILSQAKSIAEQkrfpfatdndSTNEELAIAYVLVGSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVN 169
Cdd:TIGR02917 145 QKSYEQALAIDPR----------SLYAKLGLAQLALAENRFDEARALIDEVLTAdpgnvdalllkgdlLLSLGNIELALA 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 170 DLTKAIQLQP-----------------------------SARLYRHRGTLY------FISEDYATAHEDFQQSLELNRNQ 214
Cdd:TIGR02917 215 AYRKAIALRPnniavllalatilieagefeeaekhadalLKKAPNSPLAHYlkalvdFQKKNYEDARETLQDALKSAPEY 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 215 PTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLY 294
Cdd:TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1735137162 295 HHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA-QTKVMLNDPLP 350
Cdd:TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADlETAAQLDPELG 431
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 250-336 1.37e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 57.25  E-value: 1.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKglshva 329
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLY------ 74


                  ....*..
gi 1735137162 330 MGQFYEG 336
Cdd:cd24142    75 LGQLSGG 81
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 161-314 1.59e-07

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 53.74  E-value: 1.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 161 LGRINE--AVNDLTKAIQlqpsARLYRHRGTLYfiseD----YATAHEDFQQSLELNRNQPtamlykgltffhrgllkea 234
Cdd:PRK11189   46 LARLNQilASRDLTDEER----AQLHYERGVLY----DslglRALARNDFSQALALRPDMA------------------- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 235 ieafkealkqkvdfiDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:PRK11189   99 ---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
TPR_1 pfam00515
Tetratricopeptide repeat;
249-282 1.32e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.49  E-value: 1.32e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1735137162 249 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 249-282 2.44e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 44.74  E-value: 2.44e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1735137162  249 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
134-213 4.99e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 4.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 134 IAYVLVGSGLYDEAIRHFSTMLQILSplgRINEAVNDLTkaiqlqpsARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam13424   9 LAAVLRRLGRYDEALELLEKALEIAR---RLLGPDHPLT--------ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
175-339 6.31e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 124.73  E-value: 6.31e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 175 IQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG0457     1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 333
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                  ....*.
gi 1735137162 334 YEGIKA 339
Cdd:COG0457   161 EEALEL 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
157-383 2.20e-31

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 123.19  E-value: 2.20e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 157 ILSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAI 235
Cdd:COG0457    17 AYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEAL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 236 EAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPY 315
Cdd:COG0457    97 EDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735137162 316 NEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYN 383
Cdd:COG0457   177 ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-348 6.39e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 104.32  E-value: 6.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 208 LELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQ 287
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1735137162 288 LRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 181-314 2.86e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 99.11  E-value: 2.86e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYR 260
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1735137162 261 ELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 155-374 5.88e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 107.39  E-value: 5.88e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 155 LQILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKE 233
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPdNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 234 AIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLE 313
Cdd:COG3914   165 AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137162 314 PYNEVC-----QYMKGLS-------HVAMGQFYE-GIKAQTKVMLNDPLPGQKaspeyLRVKYLreySRYLHAH 374
Cdd:COG3914   245 RGPSELspfalLYLPDDDpaellalARAWAQLVAaAAAPELPPPPNPRDPDRK-----LRIGYV---SADFRRH 310
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 131-348 6.67e-24

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 102.11  E-value: 6.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 131 ELAIAYVLvgSGLYDEAIRHFSTMLQI----------LSPL----GRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISE 195
Cdd:COG2956    13 FKGLNYLL--NGQPDKAIDLLEEALELdpetveahlaLGNLyrrrGEYDRAIRIHQKLLERDPdRAEALLELAQDYLKAG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 196 DYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKA 275
Cdd:COG2956    91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1735137162 276 LLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG2956   171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 122-318 1.22e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 98.65  E-value: 1.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 122 ATDNDSTNEE--LAIAYVLVGSGLYDEAIRHFSTML-------QILSPLGRINEAVNDLTKAIQL--------QPSARLY 184
Cdd:COG2956    34 ALELDPETVEahLALGNLYRRRGEYDRAIRIHQKLLerdpdraEALLELAQDYLKAGLLDRAEELleklleldPDDAEAL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 185 RHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGN 264
Cdd:COG2956   114 RLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD 193

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1735137162 265 FDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEV 318
Cdd:COG2956   194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 174-348 2.45e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 102.38  E-value: 2.45e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 174 AIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG3914    71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEV--CQYMKGLSHVAMG 331
Cdd:COG3914   151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADahSNLLFALRQACDW 230

                         170
                  ....*....|....*..
gi 1735137162 332 QFYEGIKAQTKVMLNDP 348
Cdd:COG3914   231 EVYDRFEELLAALARGP 247
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
165-311 1.09e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 91.52  E-value: 1.09e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 165 NEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:COG4785    57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 245 KVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRG-------------------MMLY-HHGSLQEALK 304
Cdd:COG4785   137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYlaerkldpekalallledwATAYlLQGDTEEARE 216


                  ....*..
gi 1735137162 305 NFKRCLQ 311
Cdd:COG4785   217 LFKLALA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 124-311 1.10e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 1.10e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 124 DNDSTNEELAIAYVLvgSGLYDEAIRHFSTMLQI-------LSPLGRI-------NEAVNDLTKAIQLQP-SARLYRHRG 188
Cdd:COG2956    74 DRAEALLELAQDYLK--AGLLDRAEELLEKLLELdpddaeaLRLLAEIyeqegdwEKAIEVLERLLKLGPeNAHAYCELA 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 189 TLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAA 268
Cdd:COG2956   152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1735137162 269 TESFQKALLLNQNHVQTLQLrGMMLYHHGSLQEALKNFKRCLQ 311
Cdd:COG2956   232 LELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 156-282 2.52e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 87.94  E-value: 2.52e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 156 QILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEA 234
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDPdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1735137162 235 IEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:COG4783    92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 187-365 3.14e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 91.33  E-value: 3.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 187 RGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFD 266
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 267 AATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMln 346
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL-- 171

                         170
                  ....*....|....*....
gi 1735137162 347 dplpgqKASPEYLRVKYLR 365
Cdd:COG2956   172 ------KLDPDCARALLLL 184
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 200-314 3.51e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 84.29  E-value: 3.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 200 AHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 279
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1735137162 280 QNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 166-292 1.40e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 82.36  E-value: 1.40e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 166 EAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:COG4235     1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1735137162 245 KVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMM 292
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 233-339 4.76e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 80.82  E-value: 4.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 233 EAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQL 312
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100
                  ....*....|....*....|....*..
gi 1735137162 313 EPYNEVCQYMKGLSHVAMGQFYEGIKA 339
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAA 107
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 146-339 5.31e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 88.51  E-value: 5.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 146 EAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTF 225
Cdd:COG3914     9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 226 FHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKN 305
Cdd:COG3914    89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAA 168

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1735137162 306 FKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA 339
Cdd:COG3914   169 LRRALELDPDNAEALNNLGNALQDLGRLEEAIAA 202
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 219-348 9.44e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.01  E-value: 9.44e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 219 LYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGS 298
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1735137162 299 LQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 217-348 9.92e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 80.24  E-value: 9.92e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 217 AMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHH 296
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1735137162 297 GSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 104-350 3.71e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 79.74  E-value: 3.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 104 EKILSQAKSIAEQkrfpfatdndSTNEELAIAYVLVGSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVN 169
Cdd:TIGR02917 145 QKSYEQALAIDPR----------SLYAKLGLAQLALAENRFDEARALIDEVLTAdpgnvdalllkgdlLLSLGNIELALA 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 170 DLTKAIQLQP-----------------------------SARLYRHRGTLY------FISEDYATAHEDFQQSLELNRNQ 214
Cdd:TIGR02917 215 AYRKAIALRPnniavllalatilieagefeeaekhadalLKKAPNSPLAHYlkalvdFQKKNYEDARETLQDALKSAPEY 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 215 PTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLY 294
Cdd:TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1735137162 295 HHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA-QTKVMLNDPLP 350
Cdd:TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADlETAAQLDPELG 431
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
225-314 4.30e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 71.35  E-value: 4.30e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 225 FFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAAtESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALK 304
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|
gi 1735137162 305 NFKRCLQLEP 314
Cdd:COG3063    81 YLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
222-314 5.39e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 74.95  E-value: 5.39e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 222 GLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQE 301
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                          90
                  ....*....|...
gi 1735137162 302 ALKNFKRCLQLEP 314
Cdd:COG4785   160 AIADLEKALELDP 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
133-281 6.35e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.04  E-value: 6.35e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 133 AIAYVLVGSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDY 197
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELdpddaealnnlglaLQALGRYEEALEDYDKALELDPDdAEALYNLGLALLELGRY 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 198 ATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALL 277
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206


                  ....
gi 1735137162 278 LNQN 281
Cdd:COG0457   207 LRKK 210
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 132-279 1.22e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.92  E-value: 1.22e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 132 LAIAYVLVGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELN 211
Cdd:COG5010     5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735137162 212 RNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 279
Cdd:COG5010    85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 163-314 4.90e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 70.37  E-value: 4.90e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 163 RINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEAL 242
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1735137162 243 KQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
190-279 5.18e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.58  E-value: 5.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 190 LYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIeAFKEALKQKVDFIDAYKSLGQAYRELGNFDAAT 269
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|
gi 1735137162 270 ESFQKALLLN 279
Cdd:COG3063    80 AYLERALELD 89
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 161-244 1.31e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.41  E-value: 1.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 161 LGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFK 239
Cdd:COG4235    30 LGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQ 109


                  ....*
gi 1735137162 240 EALKQ 244
Cdd:COG4235   110 KLLAL 114
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 196-349 2.16e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 65.75  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 196 DYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKA 275
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137162 276 LLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPL 349
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 184-311 8.02e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.86  E-value: 8.02e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 184 YRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELG 263
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1735137162 264 NFDAATESFQKALLLNQNHV-QTLQLrGMMLYHHGSLQEALKNFKRCLQ 311
Cdd:TIGR00990 414 EFAQAGKDYQKSIDLDPDFIfSHIQL-GVTQYKEGSIASSMATFRRCKK 461
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 122-364 1.28e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.19  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 122 ATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQ--------------ILSPLGRINEAVNDLTKAIQLQPS------- 180
Cdd:TIGR02917  16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQkdpndaearfllgkIYLALGDYAAAEKELRKALSLGYPknqvlpl 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 181 -----------------------------ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLL 231
Cdd:TIGR02917  96 larayllqgkfqqvldelpgktllddegaAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 232 KEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQ 311
Cdd:TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1735137162 312 LEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMlndplpgqKASPEYLRVKYL 364
Cdd:TIGR02917 256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDAL--------KSAPEYLPALLL 300
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 129-243 3.83e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.90  E-value: 3.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 129 NEELAIAYVLVGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQS 207
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1735137162 208 LELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALK 243
Cdd:COG5010   115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 250-348 1.48e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.82  E-value: 1.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVA 329
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                          90
                  ....*....|....*....
gi 1735137162 330 MGQFYEGIKAQTKVMLNDP 348
Cdd:COG4783    85 AGDYDEALALLEKALKLDP 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
258-348 1.77e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.26  E-value: 1.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 258 AYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKnFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGI 337
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 1735137162 338 KAQTKVMLNDP 348
Cdd:COG3063    80 AYLERALELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 109-362 1.98e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.33  E-value: 1.98e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 109 QAKSIAEQKRFPFATDNDSTNEELAiAYVLVGSGLYDEAIRHFSTMlQILSP---------------LGRINEAVNDLTK 173
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLL-GEAYLALGDFEKAAEYLAKA-TELDPenaaartqlgisklsQGDPSEAIADLET 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 174 AIQLQPS---ARLyrhrgtlyFISEDYATAHE-----DFQQSLELNR-NQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:TIGR02917 423 AAQLDPElgrADL--------LLILSYLRSGQfdkalAAAKKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 245 KVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVcqymkg 324
Cdd:TIGR02917 495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE------ 568

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1735137162 325 lSHVAMGQFYEGIK--AQTKVMLNDPLPGQKASPEYLRVK 362
Cdd:TIGR02917 569 -PALALAQYYLGKGqlKKALAILNEAADAAPDSPEAWLML 607
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 119-355 6.84e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 62.31  E-value: 6.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 119 FPFATDNDSTNEELAIAYVLVGS-----GLYDEAIRHFST--------------MLQILSPLGRINEAVNDLTKAIQLQP 179
Cdd:TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTfkclkGKHLEALADLSKsieldprvtqsyikRASMNLELGDPDKAEEDFDKALKLNS 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 180 S-ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQA 258
Cdd:TIGR00990 397 EdPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 259 YRELGNFDAATESFQ---------------------KALLL---NQNHVQTLQL---------------RGM--MLYHHG 297
Cdd:TIGR00990 477 LLDQNKFDEAIEKFDtaieleketkpmymnvlplinKALALfqwKQDFIEAENLcekaliidpecdiavATMaqLLLQQG 556

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1735137162 298 SLQEALKNFKRCLQLEPYNEvcQYMKGLShvamgqFYEGIKAQTKVMLNDPLPGQKAS 355
Cdd:TIGR00990 557 DVDEALKLFERAAELARTEG--ELVQAIS------YAEATRTQIQVQEDYPVLASKLQ 606
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
179-360 2.99e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.00  E-value: 2.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 179 PSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALkQKVDFIDAYKSLGQA 258
Cdd:COG4785     4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 259 YRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIK 338
Cdd:COG4785    83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162

                         170       180
                  ....*....|....*....|..
gi 1735137162 339 AQTKVMLNDPLPGQKASPEYLR 360
Cdd:COG4785   163 DLEKALELDPNDPERALWLYLA 184
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 174-339 3.25e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 3.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 174 AIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYK 253
Cdd:COG3914     3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 254 SLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 333
Cdd:COG3914    83 LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162


                  ....*.
gi 1735137162 334 YEGIKA 339
Cdd:COG3914   163 EEAIAA 168
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 191-276 3.99e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 55.00  E-value: 3.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 191 YFISEDYATAHEDFQQSLELNRN---QPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI---DAYKSLGQAYRELGN 264
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGD 82

                          90
                  ....*....|..
gi 1735137162 265 FDAATESFQKAL 276
Cdd:COG1729    83 YDKARATLEELI 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 135-316 6.31e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.71  E-value: 6.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 135 AYVLVGSGLYDEAIRHFSTML-------QILSPLGRINEAVNDLTKAI-------QLQP-SARLYRHRGTLYFISEDYAT 199
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALgldpddpAALSLLGEAYLALGDFEKAAeylakatELDPeNAAARTQLGISKLSQGDPSE 415

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 200 AHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLN 279
Cdd:TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1735137162 280 QNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN 316
Cdd:TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN 532
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 250-336 1.37e-08

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 57.25  E-value: 1.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKglshva 329
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLY------ 74


                  ....*..
gi 1735137162 330 MGQFYEG 336
Cdd:cd24142    75 LGQLSGG 81
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 161-314 1.59e-07

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 53.74  E-value: 1.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 161 LGRINE--AVNDLTKAIQlqpsARLYRHRGTLYfiseD----YATAHEDFQQSLELNRNQPtamlykgltffhrgllkea 234
Cdd:PRK11189   46 LARLNQilASRDLTDEER----AQLHYERGVLY----DslglRALARNDFSQALALRPDMA------------------- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 235 ieafkealkqkvdfiDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:PRK11189   99 ---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 142-348 3.79e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.93  E-value: 3.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 142 GLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQL-------QP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIlneaadaAPdSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 214 QPTAmlYKGLTFFHRGL--LKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGM 291
Cdd:TIGR02917 634 SALA--LLLLADAYAVMknYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1735137162 292 MLYHHGSLQEALKNFKRCLQLEPYNEVCQYMkGLSHVAMGQFYEGIKAQTKVMLNDP 348
Cdd:TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHP 767
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 104-342 3.99e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.93  E-value: 3.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 104 EKILSQAKSIaEQKRFPFAT-----DNDSTNEELAIAYvlvgsglYDEAIR----HFSTMLQiLSPL----GRINEAVND 170
Cdd:TIGR02917 485 REAFEKALSI-EPDFFPAAAnlariDIQEGNPDDAIQR-------FEKVLTidpkNLRAILA-LAGLylrtGNEEEAVAW 555

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 171 LTKAIQLQPSA-RLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI 249
Cdd:TIGR02917 556 LEKAAELNPQEiEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVA 329
Cdd:TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715

                         250
                  ....*....|...
gi 1735137162 330 MGQFYEGIKAQTK 342
Cdd:TIGR02917 716 QKDYPAAIQAYRK 728
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 161-278 4.93e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 52.61  E-value: 4.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 161 LGRINEAVNDLTKAIQLQPSARLYRHRGTLyfISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKE 240
Cdd:COG3071   206 LGDHDEAERLLREALKRQWDPRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEA 283

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1735137162 241 ALKQKVDfIDAYKSLGQAYRELGNFDAATESFQKALLL 278
Cdd:COG3071   284 ALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALAL 320
TPR_1 pfam00515
Tetratricopeptide repeat;
249-282 1.32e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.49  E-value: 1.32e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1735137162 249 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 249-282 2.44e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 44.74  E-value: 2.44e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1735137162  249 IDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 193-338 2.69e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.75  E-value: 2.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 193 ISEDYATAHEDFQQSLELNRNQPtamlYKGLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAY-------RELGNF 265
Cdd:TIGR00990 306 ADESYEEAARAFEKALDLGKLGE----KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYikrasmnLELGDP 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 266 DAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN-------EVCQYMKGLSHVAMGQFYEGIK 338
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlGVTQYKEGSIASSMATFRRCKK 461
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 187-244 8.94e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 43.86  E-value: 8.94e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1735137162 187 RGTLYFISEDYATAHEDFQQSLELNRNQP---TAMLYKGLTFFHRGLLKEAIEAFKEALKQ 244
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRA 63
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 225-314 1.22e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 225 FFHRGLLKEAIEAFKEALKQKVD---FIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQT---LQLRGMMLYHHGS 298
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGD 82

                          90
                  ....*....|....*.
gi 1735137162 299 LQEALKNFKRCLQLEP 314
Cdd:COG1729    83 YDKARATLEELIKKYP 98
TPR_12 pfam13424
Tetratricopeptide repeat;
216-276 1.69e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 1.69e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1735137162 216 TAMLYKGLTFFHRGLLKEAIEAFKEALK--QKVDFID------AYKSLGQAYRELGNFDAATESFQKAL 276
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEiaRRLLGPDhpltatTLLNLGRLYLELGRYEEALELLERAL 72
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
135-243 2.34e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.45  E-value: 2.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 135 AYVLVGSGLYDEAIRHFSTMLQiLSP---------------LGRINEAVNDLTKAIQLQPSARlYRHrgtlyfISEDYAT 199
Cdd:COG4785   114 GLAYLLLGDYDAALEDFDRALE-LDPdyayaylnrgialyyLGRYELAIADLEKALELDPNDP-ERA------LWLYLAE 185

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1735137162 200 AHEDFQQSLE-LNRNQPTAMLYKGLTffhrgllKEAIEAFKEALK 243
Cdd:COG4785   186 RKLDPEKALAlLLEDWATAYLLQGDT-------EEARELFKLALA 223
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 162-308 2.58e-05

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 47.99  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 162 GRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGLLKEAIEAFKEA 241
Cdd:PRK09782  590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 242 LKqkvDFIDAY---KSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLrgmmlyhHGSLQEALKNFKR 308
Cdd:PRK09782  670 HK---GLPDDPaliRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL-------TPEQNQQRFNFRR 729
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 182-274 2.93e-05

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 43.81  E-value: 2.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 182 RLYRHRGTLYFISEDYATAHEDFQQSLELNRN---QPTAMLYKGLTFFHRGLLKEAIEAFKEALKQKVDFI---DAYKSL 255
Cdd:TIGR02795   1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKstyAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKL 80

                          90
                  ....*....|....*....
gi 1735137162 256 GQAYRELGNFDAATESFQK 274
Cdd:TIGR02795  81 GMSLQELGDKEKAKATLQQ 99
TPR_12 pfam13424
Tetratricopeptide repeat;
247-312 4.12e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 4.12e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1735137162 247 DFIDAYKSLGQAYRELGNFDAATESFQKALLLNQ-----NHVQTLQLR---GMMLYHHGSLQEALKNFKRCLQL 312
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpDHPLTATTLlnlGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 97-349 4.41e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 4.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162  97 SLLSLNTEKILSQAKSIAEQKRF------------PFATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQ--ILSPLG 162
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMknyakaitslkrALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKqhPKAALG 705

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 163 ---------RIN---EAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGLTFFHRGL 230
Cdd:TIGR02917 706 felegdlylRQKdypAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 231 LKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNfDAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCL 310
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1735137162 311 QLEPYNEVCQYmkglsHVAMGQFYEGIKAQTKVMLNDPL 349
Cdd:TIGR02917 865 NIAPEAAAIRY-----HLALALLATGRKAEARKELDKLL 898
TPR_11 pfam13414
TPR repeat;
222-263 5.60e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 40.92  E-value: 5.60e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1735137162 222 GLTFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELG 263
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 162-244 6.11e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 6.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 162 GRINEAVNDLTKAIQLQPSARL----YRHRGTLYFISEDYATAHEDFQQSLEL---NRNQPTAMLYKGLTFFHRGLLKEA 234
Cdd:COG1729     7 GDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYDKA 86

                          90
                  ....*....|
gi 1735137162 235 IEAFKEALKQ 244
Cdd:COG1729    87 RATLEELIKK 96
COG3899 COG3899
Predicted ATPase [General function prediction only];
130-312 8.74e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 46.39  E-value: 8.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162  130 EELAIAYVLVG-----SGLYDEAIRHFSTMLQILSPlgrineavndltkAIQLQPSARLYRHRGTLYFISEDYATAHEDF 204
Cdd:COG3899    702 DRAARLLLRAArralaRGAYAEALRYLERALELLPP-------------DPEEEYRLALLLELAEALYLAGRFEEAEALL 768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162  205 QQSLElnrnqptAMLYKGLTFFHRGLLKEAIEafkealkqkvdfidAYKSLGQAYRelGNFDAATESFQKALLLNQNH-- 282
Cdd:COG3899    769 ERALA-------ARALAALAALRHGNPPASAR--------------AYANLGLLLL--GDYEEAYEFGELALALAERLgd 825

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1735137162  283 ----VQTLQLRGMMLYHHGSLQEALKNFKRCLQL 312
Cdd:COG3899    826 rrleARALFNLGFILHWLGPLREALELLREALEA 859
TPR_12 pfam13424
Tetratricopeptide repeat;
181-243 9.76e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 9.76e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1735137162 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQP--------TAMLYKGLTFFHRGLLKEAIEAFKEALK 243
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpltaTTLLNLGRLYLELGRYEEALELLERALA 73
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 131-223 1.11e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 131 ELAIAYVLvgSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISE 195
Cdd:COG4235    22 LLGRAYLR--LGRYDEALAAYEKALRLdpdnadalldlaeaLLAAGDTEEAEELLERALALDPDnPEALYLLGLAAFQQG 99

                          90       100
                  ....*....|....*....|....*....
gi 1735137162 196 DYATAHEDFQQSLELN-RNQPTAMLYKGL 223
Cdd:COG4235   100 DYAEAIAAWQKLLALLpADAPARLLEASI 128
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 250-281 3.92e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.27  E-value: 3.92e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1735137162 250 DAYKSLGQAYRELGNFDAATESFQKALLLNQN 281
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
137-213 5.18e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 5.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 137 VLVGSGLYDEAIRHFSTMLQI--------------LSPLGRINEAVnDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAH 201
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELdpdnadalnnlgllLLEQGRYDEAI-ALEKALKLDPNnAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1735137162 202 EDFQQSLELNRN 213
Cdd:COG3063    80 AYLERALELDPS 91
TPR_19 pfam14559
Tetratricopeptide repeat;
231-289 7.87e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 7.87e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1735137162 231 LKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNHVQTLQLR 289
Cdd:pfam14559   4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALL 62
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 162-312 1.19e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 41.91  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 162 GRINEAVNDLTKAIQLQPSARLYrHR-------GTLYFISEDYATAHEDFQQSLELNR--NQPT----AMLYKGLTFFHR 228
Cdd:pfam17874  15 GDAERALELAEQALALLPEDDLL-ARglatfvlGEAYLCLGDLDAALQAMREAEALARraDSPHvtlwALLQQGEILRAQ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 229 GLLKEAIEAFKEALK------QKVDFI--DAYKSLGQAYRELGNFDAATESFQKALLLNQNH--VQTLQLRGMMLYHH-- 296
Cdd:pfam17874  94 GRLHQALETYQQALQlardhgLQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWepDAAVDAYVLLARIAla 173

                         170
                  ....*....|....*..
gi 1735137162 297 -GSLQEALKNFKRCLQL 312
Cdd:pfam17874 174 qGELEEALTLLRRAELL 190
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 255-317 2.12e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 2.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1735137162 255 LGQAYRELGNFDAATESFQKALLLNQNHVQTLQ---LRGMMLYHHGSLQEALKNFKRCLQLEPYNE 317
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPESPDAAAallLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_1 pfam00515
Tetratricopeptide repeat;
181-213 2.89e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 2.89e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1735137162 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 232-282 2.95e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.69  E-value: 2.95e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1735137162 232 KEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNH 282
Cdd:cd24142    17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
TPR_12 pfam13424
Tetratricopeptide repeat;
134-213 4.99e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 4.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 134 IAYVLVGSGLYDEAIRHFSTMLQILSplgRINEAVNDLTkaiqlqpsARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam13424   9 LAAVLRRLGRYDEALELLEKALEIAR---RLLGPDHPLT--------ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_8 pfam13181
Tetratricopeptide repeat;
255-281 5.68e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.07  E-value: 5.68e-03
                          10        20
                  ....*....|....*....|....*..
gi 1735137162 255 LGQAYRELGNFDAATESFQKALLLNQN 281
Cdd:pfam13181   7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 181-213 7.50e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 7.50e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1735137162 181 ARLYRHRGTLYFISEDYATAHEDFQQSLELNRN 213
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 169-314 8.13e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 8.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735137162 169 NDLTKAIQLQPS-----ARLYRHRGtlyfiseDYATAHEDFQQSLELNRNQPTAMLYKGLtffHRGLLKEAIEAFKEALK 243
Cdd:COG3071   183 KALPRAERRDPElaaayARALIALG-------DHDEAERLLREALKRQWDPRLVRLYGRL---QGGDPAKQLKRAEKWLK 252

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1735137162 244 QKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQNhVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 314
Cdd:COG3071   253 KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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