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Zfp94 zinc finger protein 94 [ Mus musculus (house mouse) ]

Gene ID: 22756, updated on 8-Feb-2024

Summary

Official Symbol
Zfp94provided by MGI
Official Full Name
zinc finger protein 94provided by MGI
Primary source
MGI:MGI:107610
See related
Ensembl:ENSMUSG00000074282 AllianceGenome:MGI:107610
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in genitourinary system. Orthologous to human ZNF45 (zinc finger protein 45). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 2.5), CNS E14 (RPKM 2.3) and 28 other tissues See more
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Genomic context

See Zfp94 in Genome Data Viewer
Location:
7 A3; 7 10.27 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (24001129..24016091, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (24301704..24316698, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 51 pseudogene Neighboring gene predicted gene, 50477 Neighboring gene zinc finger protein 61 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:25084411-25084520 Neighboring gene predicted gene, 51470 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:25101698-25101895 Neighboring gene predicted gene 44513 Neighboring gene zinc finger protein 930 pseudogene Neighboring gene tescalcin-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199321.1NP_001186250.1  zinc finger protein 45 isoform 1

    See identical proteins and their annotated locations for NP_001186250.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
    Source sequence(s)
    AC159140, AK138205
    Consensus CDS
    CCDS57524.1
    UniProtKB/TrEMBL
    E9Q6Y4
    Related
    ENSMUSP00000104075.2, ENSMUST00000108436.8
    Conserved Domains (4) summary
    COG5048
    Location:226425
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:389409
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:748
    KRAB; KRAB box
    pfam13465
    Location:429453
    zf-H2C2_2; Zinc-finger double domain
  2. NM_009568.3NP_033594.1  zinc finger protein 45 isoform 2

    See identical proteins and their annotated locations for NP_033594.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon which results in the use of a downstream, in-frame, start codon, compared to variant 1. The resulting protein (isoform 2) has a shorter N-terminus when it is compared to isoform 1.
    Source sequence(s)
    AC159140, CJ174209
    Consensus CDS
    CCDS20945.1
    UniProtKB/TrEMBL
    Q61117
    Related
    ENSMUSP00000032673.9, ENSMUST00000032673.15
    Conserved Domains (4) summary
    COG5048
    Location:220419
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:383403
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:142
    KRAB; KRAB box
    pfam13465
    Location:423447
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    24001129..24016091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)