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Zfp101 zinc finger protein 101 [ Mus musculus (house mouse) ]

Gene ID: 22643, updated on 8-Feb-2024

Summary

Official Symbol
Zfp101provided by MGI
Official Full Name
zinc finger protein 101provided by MGI
Primary source
MGI:MGI:107547
See related
Ensembl:ENSMUSG00000055240 AllianceGenome:MGI:107547
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Is expressed in several structures, including early conceptus; genitourinary system; heart; hemolymphoid system gland; and liver. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E11.5 (RPKM 7.9), limb E14.5 (RPKM 6.4) and 12 other tissues See more
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Genomic context

See Zfp101 in Genome Data Viewer
Location:
17 B1; 17 17.98 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (33599148..33613593, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (33380174..33394637, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 955B Neighboring gene zinc finger protein 422, pseudogene Neighboring gene zinc finger protein 81 Neighboring gene STARR-positive B cell enhancer mm9_chr17:33495732-33496033 Neighboring gene actin-like 9 Neighboring gene NFIL3 like basic leucine zipper

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001414008.1NP_001400937.1  zinc finger protein 101 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT030734
  2. NM_001414009.1NP_001400938.1  zinc finger protein 101 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT030734
  3. NM_001414010.1NP_001400939.1  zinc finger protein 101 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CT030734
  4. NM_001414011.1NP_001400940.1  zinc finger protein 101 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CT030734
  5. NM_001414012.1NP_001400941.1  zinc finger protein 101 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CT030734
  6. NM_009542.3NP_033568.2  zinc finger protein 101 isoform 1

    See identical proteins and their annotated locations for NP_033568.2

    Status: VALIDATED

    Source sequence(s)
    CT030734
    Consensus CDS
    CCDS37565.1
    UniProtKB/TrEMBL
    Q8BP18
    Related
    ENSMUSP00000132508.3, ENSMUST00000167107.10
    Conserved Domains (6) summary
    smart00349
    Location:1050
    KRAB; krueppel associated box
    COG5048
    Location:190612
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:388408
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1049
    KRAB; KRAB box
    pfam06798
    Location:3280
    PrkA; PrkA serine protein kinase C-terminal domain
    pfam13465
    Location:428453
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    33599148..33613593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246418.4XP_011244720.1  zinc finger protein 101 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:187609
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:646
    KRAB; KRAB box