Format

Send to:

Choose Destination

Vpreb1 pre-B lymphocyte gene 1 [ Mus musculus (house mouse) ]

Gene ID: 22362, updated on 12-Aug-2018

Summary

Official Symbol
Vpreb1provided by MGI
Official Full Name
pre-B lymphocyte gene 1provided by MGI
Primary source
MGI:MGI:98936
See related
Ensembl:ENSMUSG00000059305 Vega:OTTMUSG00000017055
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CD179a; Vpreb-1
Expression
Biased expression in liver E18 (RPKM 13.3), thymus adult (RPKM 2.5) and 5 other tissues See more
Orthologs

Genomic context

See Vpreb1 in Genome Data Viewer
Location:
16 A3; 16 10.46 cM
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (16868401..16869255, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (16868494..16869348, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene stress-induced phosphoprotein 1 pseudogene Neighboring gene immunoglobulin lambda-like polypeptide 1 Neighboring gene topoisomerase (DNA) III beta Neighboring gene protein phosphatase 1F (PP2C domain containing)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC151428

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
signaling receptor activity IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
B cell proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
B cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
hemopoiesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
homeostasis of number of cells IGI
Inferred from Genetic Interaction
more info
PubMed 
immune response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
immune response IPI
Inferred from Physical Interaction
more info
PubMed 
immunoglobulin production IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
immunoglobulin production IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of cell size IDA
Inferred from Direct Assay
more info
PubMed 
regulation of cell size IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016982.2NP_058678.1  immunoglobulin iota chain precursor

    See identical proteins and their annotated locations for NP_058678.1

    Status: VALIDATED

    Source sequence(s)
    AC166832, AK010879, BE852604
    Consensus CDS
    CCDS27989.1
    UniProtKB/Swiss-Prot
    P13372
    UniProtKB/TrEMBL
    Q545E0
    Related
    ENSMUSP00000074537.4, OTTMUSP00000018545, ENSMUST00000075017.4, OTTMUST00000041309
    Conserved Domains (2) summary
    smart00410
    Location:26117
    IG_like; Immunoglobulin like
    cl11960
    Location:29118
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    16868401..16869255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center