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RSBN1L round spermatid basic protein 1 like [ Homo sapiens (human) ]

Gene ID: 222194, updated on 12-Oct-2019

Summary

Official Symbol
RSBN1Lprovided by HGNC
Official Full Name
round spermatid basic protein 1 likeprovided by HGNC
Primary source
HGNC:HGNC:24765
See related
Ensembl:ENSG00000187257
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 10.5), thyroid (RPKM 9.2) and 25 other tissues See more
Orthologs

Genomic context

See RSBN1L in Genome Data Viewer
Location:
7q11.23
Exon count:
8
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (77696459..77783022)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (77325743..77409120)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 12 Neighboring gene uncharacterized LOC105375363 Neighboring gene Alu-mediated CDKN1A/p21 transcriptional regulator Neighboring gene transmembrane protein 60 Neighboring gene putative homeodomain transcription factor 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
New loci associated with kidney function and chronic kidney disease.
NHGRI GWA Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
NHGRI GWA Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Pr55(Gag) gag HIV-1 Gag interacts with RSBN1L as demonstrated by proximity dependent biotinylation proteomics PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ42526, FLJ45813, MGC71764

Gene Ontology Provided by GOA

Function Evidence Code Pubs
dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
lysine-specific demethylase RSBN1L
Names
round spermatid basic protein 1-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198467.3NP_940869.2  lysine-specific demethylase RSBN1L

    See identical proteins and their annotated locations for NP_940869.2

    Status: VALIDATED

    Source sequence(s)
    AC004955, AK127713, BC059402, DA097202
    Consensus CDS
    CCDS43607.1
    UniProtKB/Swiss-Prot
    Q6PCB5
    Related
    ENSP00000334040.7, ENST00000334955.13

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    77696459..77783022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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