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Rsbn1l round spermatid basic protein 1-like [ Mus musculus (house mouse) ]

Gene ID: 242860, updated on 26-Sep-2022

Summary

Official Symbol
Rsbn1lprovided by MGI
Official Full Name
round spermatid basic protein 1-likeprovided by MGI
Primary source
MGI:MGI:3036237
See related
Ensembl:ENSMUSG00000039968 AllianceGenome:MGI:3036237
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
8430412F05Rik; C330002G24Rik
Summary
Predicted to be active in nucleus. Orthologous to human RSBN1L (round spermatid basic protein 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 4.5), thymus adult (RPKM 3.6) and 28 other tissues See more
Orthologs
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Genomic context

See Rsbn1l in Genome Data Viewer
Location:
5; 5 A3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (21097284..21163019, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (20892290..20957946, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene putative homeodomain transcription factor 2 Neighboring gene predicted gene, 42219 Neighboring gene transmembrane protein 60 Neighboring gene RIKEN cDNA A630072M18 gene Neighboring gene protein tyrosine phosphatase, non-receptor type 12 Neighboring gene predicted gene, 42221

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
lysine-specific demethylase RSBN1L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080977.1NP_001074446.1  lysine-specific demethylase RSBN1L

    See identical proteins and their annotated locations for NP_001074446.1

    Status: VALIDATED

    Source sequence(s)
    AC125024, AK033374, BF453931, BY014220, BY106463
    Consensus CDS
    CCDS39020.1
    UniProtKB/TrEMBL
    D3Z0K6
    Related
    ENSMUSP00000039482.6, ENSMUST00000036489.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    21097284..21163019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001784694.3 RNA Sequence