U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pou2f2 POU domain, class 2, transcription factor 2 [ Mus musculus (house mouse) ]

Gene ID: 18987, updated on 4-Mar-2023

Summary

Official Symbol
Pou2f2provided by MGI
Official Full Name
POU domain, class 2, transcription factor 2provided by MGI
Primary source
MGI:MGI:101897
See related
Ensembl:ENSMUSG00000008496 AllianceGenome:MGI:101897
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Otf2; Oct-2; Oct2a; Oct2b; Oct2c; Oct2d; Otf-2
Summary
Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein domain specific binding activity. Involved in cellular response to virus; positive regulation of interleukin-6 production; and positive regulation of transcription by RNA polymerase II. Acts upstream of or within cell maturation; mature B cell differentiation; and positive regulation of transcription, DNA-templated. Located in nucleus. Is expressed in several structures, including embryo mesenchyme; genitourinary system; nervous system; sensory organ; and thymus. Orthologous to human POU2F2 (POU class 2 homeobox 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in spleen adult (RPKM 14.3), whole brain E14.5 (RPKM 4.2) and 11 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Pou2f2 in Genome Data Viewer
Location:
7 A3; 7 13.73 cM
Exon count:
20
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (24786766..24880211, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (25087350..25180797, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ATPase, Na+/K+ transporting, alpha 3 polypeptide Neighboring gene microRNA 7047 Neighboring gene glutamate receptor, ionotropic, kainate 5 (gamma 2) Neighboring gene zinc finger protein 574 Neighboring gene microRNA 6537 Neighboring gene RIKEN cDNA D930028M14 gene Neighboring gene RIKEN cDNA 9130221H12 gene Neighboring gene death effector domain-containing DNA binding protein 2 Neighboring gene microRNA 7048 Neighboring gene zinc finger protein 526 Neighboring gene glycogen synthase kinase 3 alpha

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (4)  1 citation
  • Endonuclease-mediated (3) 

General gene information

Markers

Homology

Clone Names

  • MGC124154, MGC124155, MGC124156

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
POU domain, class 2, transcription factor 2
Names
lymphoid-restricted immunoglobulin octamer-binding protein NF-A2
octamer-binding protein 2
octamer-binding transcription factor 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163554.2NP_001157026.1  POU domain, class 2, transcription factor 2 isoform 4

    See identical proteins and their annotated locations for NP_001157026.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has an additional exon in the 3' coding region, as compared to variant 1. The resulting isoform (4) has a longer and different C-terminus, as compared to isoform 1.
    Source sequence(s)
    AC120393
    Consensus CDS
    CCDS52144.1
    UniProtKB/Swiss-Prot
    Q00196
    Related
    ENSMUSP00000104056.4, ENSMUST00000108418.11
    Conserved Domains (2) summary
    smart00352
    Location:179253
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:284337
    Homeobox; Homeobox domain
  2. NM_001163555.2NP_001157027.1  POU domain, class 2, transcription factor 2 isoform 3

    See identical proteins and their annotated locations for NP_001157027.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an additional segment in the coding region, as compared to variant 1. The resulting isoform (3) is longer and has the same N- and C-termini, as compared to isoform 1.
    Source sequence(s)
    AC120393
    Consensus CDS
    CCDS52145.1
    UniProtKB/Swiss-Prot
    Q00196
    UniProtKB/TrEMBL
    A0A8C6H026
    Related
    ENSMUSP00000104055.3, ENSMUST00000108417.10
    Conserved Domains (2) summary
    smart00352
    Location:201275
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:306360
    Homeobox; Homeobox domain
  3. NM_001163556.2NP_001157028.1  POU domain, class 2, transcription factor 2 isoform 1

    See identical proteins and their annotated locations for NP_001157028.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AC120393
    Consensus CDS
    CCDS52143.1
    UniProtKB/Swiss-Prot
    Q00196, Q64245
    Related
    ENSMUSP00000135075.2, ENSMUST00000175774.9
    Conserved Domains (2) summary
    smart00352
    Location:179253
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:284338
    Homeobox; Homeobox domain
  4. NM_001417132.1NP_001404061.1  POU domain, class 2, transcription factor 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC120393
  5. NM_001417133.1NP_001404062.1  POU domain, class 2, transcription factor 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC120393
  6. NM_001417134.1NP_001404063.1  POU domain, class 2, transcription factor 2 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC120393
  7. NM_001417135.1NP_001404064.1  POU domain, class 2, transcription factor 2 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC120393
  8. NM_001417136.1NP_001404065.1  POU domain, class 2, transcription factor 2 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC120393
  9. NM_001417137.1NP_001404066.1  POU domain, class 2, transcription factor 2 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC120393
  10. NM_001417138.1NP_001404067.1  POU domain, class 2, transcription factor 2 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC120393
  11. NM_001417139.1NP_001404068.1  POU domain, class 2, transcription factor 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC120393
  12. NM_001417140.1NP_001404069.1  POU domain, class 2, transcription factor 2 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC120393
  13. NM_001417141.1NP_001404070.1  POU domain, class 2, transcription factor 2 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC120393
  14. NM_011138.3NP_035268.2  POU domain, class 2, transcription factor 2 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an additional segment in the coding region, as compared to variant 1. The resulting isoform (2) is longer and has the same N- and C-termini, as compared to isoform 1.
    Source sequence(s)
    AC120393
    Consensus CDS
    CCDS39834.1
    UniProtKB/Swiss-Prot
    Q00196
    Related
    ENSMUSP00000104053.3, ENSMUST00000108415.10
    Conserved Domains (3) summary
    smart00352
    Location:195269
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:300354
    Homeobox; Homeobox domain
    pfam09770
    Location:116193
    PAT1; Topoisomerase II-associated protein PAT1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    24786766..24880211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006539655.5XP_006539718.1  POU domain, class 2, transcription factor 2 isoform X14

    Conserved Domains (3) summary
    smart00352
    Location:313387
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:206334
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:418472
    Homeobox; Homeobox domain
  2. XM_030242233.2XP_030098093.1  POU domain, class 2, transcription factor 2 isoform X16

    Conserved Domains (2) summary
    smart00352
    Location:297371
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:402456
    Homeobox; Homeobox domain
  3. XM_006539647.5XP_006539710.1  POU domain, class 2, transcription factor 2 isoform X1

    Conserved Domains (3) summary
    smart00352
    Location:313387
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:206334
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:418472
    Homeobox; Homeobox domain
  4. XM_006539652.5XP_006539715.1  POU domain, class 2, transcription factor 2 isoform X5

    Conserved Domains (3) summary
    smart00352
    Location:291365
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:184312
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:396450
    Homeobox; Homeobox domain
  5. XM_006539651.5XP_006539714.1  POU domain, class 2, transcription factor 2 isoform X4

    Conserved Domains (2) summary
    smart00352
    Location:297371
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:402456
    Homeobox; Homeobox domain
  6. XM_006539661.4XP_006539724.1  POU domain, class 2, transcription factor 2 isoform X20

    Conserved Domains (2) summary
    smart00352
    Location:198272
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:303357
    Homeobox; Homeobox domain
  7. XM_006539653.5XP_006539716.1  POU domain, class 2, transcription factor 2 isoform X11

    Conserved Domains (2) summary
    smart00352
    Location:220294
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:325379
    Homeobox; Homeobox domain
  8. XM_030242225.2XP_030098085.1  POU domain, class 2, transcription factor 2 isoform X9

    Conserved Domains (2) summary
    smart00352
    Location:275349
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:380434
    Homeobox; Homeobox domain
  9. XM_006539660.5XP_006539723.1  POU domain, class 2, transcription factor 2 isoform X19

    Conserved Domains (2) summary
    smart00352
    Location:204278
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:309363
    Homeobox; Homeobox domain
  10. XM_006539662.5XP_006539725.1  POU domain, class 2, transcription factor 2 isoform X21

    Conserved Domains (2) summary
    smart00352
    Location:182256
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:287341
    Homeobox; Homeobox domain
  11. XM_006539656.5XP_006539719.1  POU domain, class 2, transcription factor 2 isoform X15

    Conserved Domains (2) summary
    smart00352
    Location:182256
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:287341
    Homeobox; Homeobox domain
  12. XM_006539654.5XP_006539717.1  POU domain, class 2, transcription factor 2 isoform X12

    Conserved Domains (2) summary
    smart00352
    Location:198272
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:303357
    Homeobox; Homeobox domain
  13. XM_030242226.2XP_030098086.1  POU domain, class 2, transcription factor 2 isoform X10

    Conserved Domains (2) summary
    smart00352
    Location:260334
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:365419
    Homeobox; Homeobox domain
  14. XM_030242222.2XP_030098082.1  POU domain, class 2, transcription factor 2 isoform X7

    Conserved Domains (2) summary
    smart00352
    Location:282356
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:387441
    Homeobox; Homeobox domain
  15. XM_030242224.2XP_030098084.1  POU domain, class 2, transcription factor 2 isoform X8

    Conserved Domains (3) summary
    smart00352
    Location:276350
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:169297
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:381435
    Homeobox; Homeobox domain
  16. XM_006539649.5XP_006539712.1  POU domain, class 2, transcription factor 2 isoform X3

    See identical proteins and their annotated locations for XP_006539712.1

    Conserved Domains (3) summary
    smart00352
    Location:298372
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:191319
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:403457
    Homeobox; Homeobox domain
  17. XM_006539650.5XP_006539713.1  POU domain, class 2, transcription factor 2 isoform X3

    See identical proteins and their annotated locations for XP_006539713.1

    Conserved Domains (3) summary
    smart00352
    Location:298372
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:191319
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:403457
    Homeobox; Homeobox domain
  18. XM_030242227.2XP_030098087.1  POU domain, class 2, transcription factor 2 isoform X10

    Conserved Domains (2) summary
    smart00352
    Location:260334
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:365419
    Homeobox; Homeobox domain
  19. XM_011250457.4XP_011248759.1  POU domain, class 2, transcription factor 2 isoform X3

    See identical proteins and their annotated locations for XP_011248759.1

    Conserved Domains (3) summary
    smart00352
    Location:298372
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:191319
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:403457
    Homeobox; Homeobox domain
  20. XM_030242223.2XP_030098083.1  POU domain, class 2, transcription factor 2 isoform X7

    Conserved Domains (2) summary
    smart00352
    Location:282356
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:387441
    Homeobox; Homeobox domain
  21. XM_030242228.2XP_030098088.1  POU domain, class 2, transcription factor 2 isoform X10

    Conserved Domains (2) summary
    smart00352
    Location:260334
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:365419
    Homeobox; Homeobox domain
  22. XM_030242232.2XP_030098092.1  POU domain, class 2, transcription factor 2 isoform X13

    Conserved Domains (2) summary
    smart00352
    Location:195269
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:300354
    Homeobox; Homeobox domain
  23. XM_036152791.1XP_036008684.1  POU domain, class 2, transcription factor 2 isoform X6

    Conserved Domains (3) summary
    smart00352
    Location:288362
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:181309
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:393447
    Homeobox; Homeobox domain
  24. XM_006539648.4XP_006539711.1  POU domain, class 2, transcription factor 2 isoform X2

    Conserved Domains (3) summary
    smart00352
    Location:310384
    POU; Found in Pit-Oct-Unc transcription factors
    PRK10263
    Location:203331
    PRK10263; DNA translocase FtsK; Provisional
    pfam00046
    Location:415469
    Homeobox; Homeobox domain
  25. XM_006539659.3XP_006539722.1  POU domain, class 2, transcription factor 2 isoform X18

    UniProtKB/Swiss-Prot
    Q00196
    Related
    ENSMUSP00000096276.3, ENSMUST00000098679.10
    Conserved Domains (2) summary
    smart00352
    Location:201275
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:306360
    Homeobox; Homeobox domain
  26. XM_006539658.5XP_006539721.1  POU domain, class 2, transcription factor 2 isoform X17

    Conserved Domains (2) summary
    smart00352
    Location:204278
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:309363
    Homeobox; Homeobox domain