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Npas2 neuronal PAS domain protein 2 [ Mus musculus (house mouse) ]

Gene ID: 18143, updated on 8-Feb-2024

Summary

Official Symbol
Npas2provided by MGI
Official Full Name
neuronal PAS domain protein 2provided by MGI
Primary source
MGI:MGI:109232
See related
Ensembl:ENSMUSG00000026077 AllianceGenome:MGI:109232
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MOP4; bHLHe9
Summary
The protein encoded by this gene is a member of the basic helix-loop-helix (bHLH)-PAS family of transcription factors. The encoded protein may play a regulatory role in the acquisition of specific types of memory. It also may function as a part of a molecular clock operative in the mammalian forebrain. [provided by RefSeq, Dec 2014]
Expression
Broad expression in small intestine adult (RPKM 16.1), colon adult (RPKM 13.4) and 17 other tissues See more
Orthologs
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Genomic context

See Npas2 in Genome Data Viewer
Location:
1 B; 1 17.98 cM
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (39233013..39402321)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (39193702..39363240)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35222 Neighboring gene STARR-seq mESC enhancer starr_00703 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:39148051-39148289 Neighboring gene STARR-seq mESC enhancer starr_00706 Neighboring gene STARR-seq mESC enhancer starr_00707 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:39249153-39249481 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:39249871-39249980 Neighboring gene microRNA 6349 Neighboring gene predicted gene 20428 Neighboring gene microrchidia 2A pseudogene Neighboring gene STARR-seq mESC enhancer starr_00710 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene predicted gene, 53549 Neighboring gene TBC1 domain family, member 8 Neighboring gene ribosomal protein L31 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:39535681-39535790 Neighboring gene STARR-seq mESC enhancer starr_00719 Neighboring gene predicted gene, 24826

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC129355

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 
enables Hsp90 protein binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in DNA damage response ISO
Inferred from Sequence Orthology
more info
 
involved_in circadian regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in circadian regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in circadian rhythm IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within circadian sleep/wake cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within locomotor rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of DNA repair ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of behavioral fear response IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in response to redox state IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to redox state ISO
Inferred from Sequence Orthology
more info
 
involved_in response to xenobiotic stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within rhythmic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of CLOCK-BMAL transcription complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of transcription regulator complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
neuronal PAS domain-containing protein 2
Names
neuronal PAS2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008719.2NP_032745.2  neuronal PAS domain-containing protein 2

    See identical proteins and their annotated locations for NP_032745.2

    Status: VALIDATED

    Source sequence(s)
    BB524729, BC109166, BG070037, U77969
    Consensus CDS
    CCDS48244.1
    UniProtKB/Swiss-Prot
    P97460
    UniProtKB/TrEMBL
    G3X9B7
    Related
    ENSMUSP00000054719.8, ENSMUST00000056815.9
    Conserved Domains (4) summary
    TIGR02813
    Location:440740
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    pfam00989
    Location:84195
    PAS; PAS fold
    pfam14598
    Location:249352
    PAS_11; PAS domain
    cd19737
    Location:177
    bHLH-PAS_NPAS2_PASD4; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in neuronal PAS domain-containing protein 2 (NPAS2) and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    39233013..39402321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011238452.4XP_011236754.1  neuronal PAS domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011236754.1

    UniProtKB/Swiss-Prot
    P97460
    UniProtKB/TrEMBL
    G3X9B7
    Conserved Domains (4) summary
    TIGR02813
    Location:440740
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    pfam00989
    Location:84195
    PAS; PAS fold
    pfam14598
    Location:249352
    PAS_11; PAS domain
    cd19737
    Location:177
    bHLH-PAS_NPAS2_PASD4; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in neuronal PAS domain-containing protein 2 (NPAS2) and similar proteins