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FAM98C family with sequence similarity 98 member C [ Homo sapiens (human) ]

Gene ID: 147965, updated on 1-Jun-2020

Summary

Official Symbol
FAM98Cprovided by HGNC
Official Full Name
family with sequence similarity 98 member Cprovided by HGNC
Primary source
HGNC:HGNC:27119
See related
Ensembl:ENSG00000130244
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in duodenum (RPKM 5.6), stomach (RPKM 5.5) and 25 other tissues See more
Orthologs

Genomic context

See FAM98C in Genome Data Viewer
Location:
19q13.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (38403124..38409088)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (38893775..38899728)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene sprouty related EVH1 domain containing 3 Neighboring gene gametogenetin Neighboring gene RAS guanyl releasing protein 4 Neighboring gene ryanodine receptor 1 Neighboring gene uncharacterized LOC107985290 Neighboring gene uncharacterized LOC105372397 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ44669

Gene Ontology Provided by GOA

Component Evidence Code Pubs
tRNA-splicing ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054925.1 RefSeqGene

    Range
    5012..10965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001351675.1NP_001338604.1  protein FAM98C isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate in-frame exons compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    BC036482, BC080606, BC143830
    Consensus CDS
    CCDS86763.1
    Related
    ENSP00000340348.6, ENST00000343358.11
    Conserved Domains (1) summary
    pfam10239
    Location:18252
    DUF2465; Protein of unknown function (DUF2465)
  2. NM_174905.3NP_777565.3  protein FAM98C isoform 1

    See identical proteins and their annotated locations for NP_777565.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC036482, BC100033, BC117258
    Consensus CDS
    CCDS42562.1
    UniProtKB/Swiss-Prot
    Q17RN3
    Related
    ENSP00000252530.4, ENST00000252530.9
    Conserved Domains (1) summary
    pfam10239
    Location:18334
    DUF2465; Protein of unknown function (DUF2465)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    38403124..38409088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017026354.1XP_016881843.1  protein FAM98C isoform X1

RNA

  1. XR_935748.2 RNA Sequence

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