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LSM11 LSM11, U7 small nuclear RNA associated [ Homo sapiens (human) ]

Gene ID: 134353, updated on 28-Aug-2021

Summary

Official Symbol
LSM11provided by HGNC
Official Full Name
LSM11, U7 small nuclear RNA associatedprovided by HGNC
Primary source
HGNC:HGNC:30860
See related
Ensembl:ENSG00000155858 MIM:617910
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AGS8
Expression
Ubiquitous expression in brain (RPKM 3.6), testis (RPKM 3.3) and 25 other tissues See more
Orthologs
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Genomic context

See LSM11 in Genome Data Viewer
Location:
5q33.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (157743712..157760709)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (157170720..157187717)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377676 Neighboring gene tRNA-histidine guanylyltransferase 1 like Neighboring gene clathrin interactor 1 Neighboring gene RNA, U6 small nuclear 260, pseudogene Neighboring gene ribosomal protein lateral stalk subunit P2 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13097, FLJ30735, FLJ38273, FLJ41957, FLJ42254

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables U7 snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables U7 snRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables U7 snRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of U7 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of U7 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
part_of U7 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of histone pre-mRNA 3'end processing complex ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in nuclear body IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
part_of telomerase holoenzyme complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
U7 snRNA-associated Sm-like protein LSm11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173491.4NP_775762.1  U7 snRNA-associated Sm-like protein LSm11

    See identical proteins and their annotated locations for NP_775762.1

    Status: VALIDATED

    Source sequence(s)
    AC026407, AI271367, BC051353, BC126449
    Consensus CDS
    CCDS4342.1
    UniProtKB/Swiss-Prot
    P83369
    Related
    ENSP00000286307.5, ENST00000286307.6
    Conserved Domains (1) summary
    cd01739
    Location:159224
    LSm11_M; Like-Sm protein 11, middle domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    157743712..157760709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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