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LOC120344578 proto-oncogene vav-like [ Styela clava ]

Gene ID: 120344578, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120344578
Gene description
proto-oncogene vav-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Styela clava
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Styelidae; Styela
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Genomic context

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See LOC120344578 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM1312258v2 (GCF_013122585.1) Unplaced Scaffold NW_024102839.1 (7739298..7796631, complement)

NW_024102839.1Genomic Context describing neighboring genes Neighboring gene influenza virus NS1A-binding protein homolog Neighboring gene uncharacterized LOC120344841 Neighboring gene cytochrome b-245 heavy chain-like Neighboring gene flavin-containing monooxygenase 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024102839 Unplaced Scaffold Reference ASM1312258v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
guanine nucleotide exchange factor VAV2-like; proto-oncogene vav-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Styela clava Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1312258v2 Primary Assembly

Genomic

  1. NW_024102839.1 Reference ASM1312258v2 Primary Assembly

    Range
    7739298..7796631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039413871.1 → XP_039269805.1  proto-oncogene vav-like isoform X3

    Conserved Domains (7) summary
    smart00325
    Location:207 → 381
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    smart00326
    Location:899 → 953
    SH3; Src homology 3 domains
    cd21201
    Location:5 → 119
    CH_VAV; calponin homology (CH) domain found in VAV proteins
    cd20810
    Location:526 → 571
    C1_VAV; protein kinase C conserved region 1 (C1 domain) found in VAV proteins
    cl15255
    Location:746 → 845
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:629 → 687
    SH3; Src Homology 3 domain superfamily
    cl17171
    Location:399 → 520
    PH-like; Pleckstrin homology-like domain

  2. XM_039413869.1 → XP_039269803.1  proto-oncogene vav-like isoform X1

    Conserved Domains (7) summary
    smart00325
    Location:207 → 381
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    smart00326
    Location:919 → 973
    SH3; Src homology 3 domains
    cd21201
    Location:5 → 119
    CH_VAV; calponin homology (CH) domain found in VAV proteins
    cd20810
    Location:526 → 571
    C1_VAV; protein kinase C conserved region 1 (C1 domain) found in VAV proteins
    cl15255
    Location:766 → 865
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:629 → 687
    SH3; Src Homology 3 domain superfamily
    cl17171
    Location:399 → 520
    PH-like; Pleckstrin homology-like domain

  3. XM_039413870.1 → XP_039269804.1  guanine nucleotide exchange factor VAV2-like isoform X2

    Conserved Domains (7) summary
    smart00325
    Location:207 → 381
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    smart00326
    Location:906 → 960
    SH3; Src homology 3 domains
    cd21201
    Location:5 → 119
    CH_VAV; calponin homology (CH) domain found in VAV proteins
    cd20810
    Location:526 → 571
    C1_VAV; protein kinase C conserved region 1 (C1 domain) found in VAV proteins
    cl15255
    Location:753 → 852
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:629 → 687
    SH3; Src Homology 3 domain superfamily
    cl17171
    Location:399 → 520
    PH-like; Pleckstrin homology-like domain

  4. XM_039413873.1 → XP_039269807.1  proto-oncogene vav-like isoform X5

    Conserved Domains (7) summary
    smart00325
    Location:207 → 381
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    smart00326
    Location:882 → 936
    SH3; Src homology 3 domains
    cd21201
    Location:5 → 119
    CH_VAV; calponin homology (CH) domain found in VAV proteins
    cd20810
    Location:526 → 571
    C1_VAV; protein kinase C conserved region 1 (C1 domain) found in VAV proteins
    cl15255
    Location:731 → 828
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:629 → 687
    SH3; Src Homology 3 domain superfamily
    cl17171
    Location:399 → 520
    PH-like; Pleckstrin homology-like domain

  5. XM_039413874.1 → XP_039269808.1  proto-oncogene vav-like isoform X6

    Conserved Domains (7) summary
    smart00325
    Location:207 → 381
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    smart00326
    Location:875 → 929
    SH3; Src homology 3 domains
    cd21201
    Location:5 → 119
    CH_VAV; calponin homology (CH) domain found in VAV proteins
    cd20810
    Location:526 → 571
    C1_VAV; protein kinase C conserved region 1 (C1 domain) found in VAV proteins
    cl15255
    Location:724 → 821
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:629 → 687
    SH3; Src Homology 3 domain superfamily
    cl17171
    Location:399 → 520
    PH-like; Pleckstrin homology-like domain

  6. XM_039413872.1 → XP_039269806.1  proto-oncogene vav-like isoform X4

    Conserved Domains (7) summary
    smart00325
    Location:207 → 381
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    smart00326
    Location:895 → 949
    SH3; Src homology 3 domains
    cd21201
    Location:5 → 119
    CH_VAV; calponin homology (CH) domain found in VAV proteins
    cd20810
    Location:526 → 571
    C1_VAV; protein kinase C conserved region 1 (C1 domain) found in VAV proteins
    cl15255
    Location:744 → 841
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:629 → 687
    SH3; Src Homology 3 domain superfamily
    cl17171
    Location:399 → 520
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
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