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PTPRE protein tyrosine phosphatase receptor type E [ Trachemys scripta elegans ]

Gene ID: 117880401, updated on 19-Mar-2024

Summary

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Gene symbol
PTPRE
Gene description
protein tyrosine phosphatase receptor type E
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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See PTPRE in Genome Data Viewer
Location:
chromosome: 7
Exon count:
22
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 7 NC_048304.1 (102927346..103126366, complement)

Chromosome 7 - NC_048304.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117880270 Neighboring gene marker of proliferation Ki-67 Neighboring gene clarin 3 Neighboring gene forkhead box I2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048304.1 Chromosome 7 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048304.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    102927346..103126366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034776553.1 → XP_034632444.1  receptor-type tyrosine-protein phosphatase epsilon isoform X1

  2. XM_034776554.1 → XP_034632445.1  receptor-type tyrosine-protein phosphatase epsilon isoform X2

  3. XM_034776552.1 → XP_034632443.1  receptor-type tyrosine-protein phosphatase epsilon isoform X1

  4. XM_034776555.1 → XP_034632446.1  receptor-type tyrosine-protein phosphatase epsilon isoform X3

  5. XM_034776556.1 → XP_034632447.1  receptor-type tyrosine-protein phosphatase epsilon isoform X4

Nucleotide Protein
Heading Accession and Version

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