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sod1 superoxide dismutase 1, soluble [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117743104, updated on 19-Mar-2024

Summary

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Gene symbol
sod1
Gene description
superoxide dismutase 1, soluble
See related
Ensembl:ENSCLMG00005013631
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 14 NC_046979.1 (11780082..11782868, complement)

Chromosome 14 - NC_046979.1Genomic Context describing neighboring genes Neighboring gene map3k7 C-terminal like Neighboring gene glutamate receptor, ionotropic, kainate 1a Neighboring gene T-lymphoma invasion and metastasis-inducing protein 1-like Neighboring gene SR-related CTD-associated factor 4a Neighboring gene hormonally up-regulated Neu-associated kinase Neighboring gene MIS18 kinetochore protein A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046979.1 Chromosome 14 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046979.1 Reference fCycLum1.pri

    Range
    11780082..11782868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034550864.1 → XP_034406755.1  superoxide dismutase [Cu-Zn]

    UniProtKB/TrEMBL
    A0A8C3G1Q1
    Related
    ENSCLMP00005027971.1, ENSCLMT00005029166.1
    Conserved Domains (1) summary
    cd00305
    Location:3 → 146
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
Nucleotide Protein
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